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HM114277.1__AEQ21033.1__E3_1190__00125
Bact-VirHM114277.1__AEQ21033.1__E3_1190__00125
Identity
- Accession:
- HM114277 ↗
- Kingdom:
- phage
Quality
71.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 224-333
Domain cluster:
rep: BML_08182015_1_5m_scaffold_9_prodigal-single.1__X__X__00022__D715-825
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18896.6 best | SLT_3 | 80.6 | 1.20e-22 | 79.1% | 98.8% |
| PF01464.26 | SLT | 27.1 | 3.60e-06 | 78.2% | 47.0% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iizA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.83 | 79.0 | 7.66e-01 | 100.0% | 95.8% |
| 4yf2A00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.82 | 77.0 | 7.20e-01 | 100.0% | 96.2% |
| 6ukcA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.80 | 75.0 | 7.02e-01 | 100.0% | 95.5% |
| 1hfxA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.77 | 72.0 | 6.95e-01 | 100.0% | 95.9% |
| 1qsaA03 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.77 | 72.0 | 6.09e-01 | 100.0% | 89.0% |
| 4yibA01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.76 | 69.0 | 6.08e-01 | 98.2% | 92.4% |
| 3ct5A00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.74 | 68.0 | 5.98e-01 | 100.0% | 91.8% |
| 6cfcA01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.74 | 68.0 | 5.90e-01 | 98.2% | 93.2% |
| 1am7A00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.74 | 63.0 | 5.62e-01 | 91.8% | 97.4% |
| 2dqaA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.72 | 61.0 | 5.87e-01 | 90.9% | 98.4% |
| 7e1lB01 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 35.0 | 2.93e-01 | 77.3% | 34.9% |
| 1i1nA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 42.0 | 3.38e-01 | 90.9% | 53.1% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4218605 | 235.1.1.1 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Lys | 0.86 | 76.0 | 7.48e-01 | 92.7% | 95.7% |
| 3254511 | 235.1.1.1 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Lys | 0.85 | 75.0 | 7.67e-01 | 94.5% | 95.2% |
| 82935 | 235.1.1.1 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Lys | 0.83 | 78.0 | 7.15e-01 | 100.0% | 96.4% |
| 3397092 | 235.1.1.1 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Lys | 0.83 | 78.0 | 7.23e-01 | 100.0% | 94.7% |
| 3527879 | 235.1.1.1 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Lys | 0.82 | 77.0 | 7.28e-01 | 100.0% | 93.8% |
| 3396023 | 235.1.1.1 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Lys | 0.81 | 76.0 | 7.42e-01 | 100.0% | 96.7% |
| 3398878 | 235.1.1.1 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Lys | 0.81 | 76.0 | 7.38e-01 | 100.0% | 97.5% |
| 3317412 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.80 | 75.0 | 6.02e-01 | 100.0% | 73.0% |
| 150591 | 235.1.1.1 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Lys | 0.80 | 75.0 | 7.21e-01 | 98.2% | 95.9% |
| 4942484 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.80 | 75.0 | 6.07e-01 | 100.0% | 90.7% |
| 3587750 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.80 | 66.0 | 6.75e-01 | 86.4% | 100.0% |
| 3985073 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.79 | 71.0 | 6.58e-01 | 96.4% | 95.6% |
| 4032309 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.79 | 64.0 | 6.45e-01 | 85.5% | 97.3% |
| 2663209 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.79 | 71.0 | 5.95e-01 | 97.3% | 95.1% |
| 3947473 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.78 | 70.0 | 6.29e-01 | 96.4% | 89.3% |
| 3945340 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.78 | 66.0 | 5.86e-01 | 89.1% | 100.0% |
| 2647598 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.78 | 70.0 | 5.88e-01 | 97.3% | 94.5% |
| 4205221 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.78 | 72.0 | 6.28e-01 | 99.1% | 99.4% |
| 4431057 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.77 | 72.0 | 6.48e-01 | 100.0% | 98.6% |
| 3838879 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.77 | 71.0 | 6.38e-01 | 100.0% | 94.6% |
| 3289790 | 235.1.1.23 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme2 | 0.77 | 70.0 | 6.23e-01 | 100.0% | 94.2% |
| 3979308 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.77 | 71.0 | 5.99e-01 | 100.0% | 97.7% |
| 3978377 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.75 | 70.0 | 5.68e-01 | 100.0% | 90.3% |
| 4164050 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.75 | 70.0 | 5.58e-01 | 100.0% | 85.9% |
| 1253692 | 235.1.1.23 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme2 | 0.73 | 67.0 | 5.86e-01 | 100.0% | 88.3% |
| 3279121 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.72 | 58.0 | 6.27e-01 | 88.2% | 100.0% |
| 3970721 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.72 | 65.0 | 5.58e-01 | 100.0% | 90.3% |
| 3960956 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.71 | 61.0 | 5.91e-01 | 90.9% | 98.3% |
| 3586810 | 235.1.1.33 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › PF31186 | 0.71 | 64.0 | 5.40e-01 | 100.0% | 100.0% |
| 3720940 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.69 | 61.0 | 5.18e-01 | 95.5% | 84.0% |
| 3245104 | 235.1.1.12 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Destabilase | 0.67 | 59.0 | 5.63e-01 | 94.5% | 99.2% |
| 4274409 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.58 | 30.0 | 3.43e-01 | 70.9% | 65.9% |
| 3590802 | 162.1.1.0 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD | 0.53 | 39.0 | 3.85e-01 | 77.3% | 88.3% |
| 4413367 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.50 | 44.0 | 2.98e-01 | 100.0% | 40.2% |
D2
medium
residues 20-112_589-629_718-760
Domain cluster:
rep: NC_077212__YP_010805990.1__QKV93-gp54__00054__D1-103_787-857
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2p5zX01 | 2.30.110.50 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.79 | 66.0 | 6.90e-01 | 100.0% | 93.4% |
| 4uhvA01 | 2.30.110.50 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.65 | 61.0 | 5.91e-01 | 100.0% | 91.8% |
| 2qf4A02 | 2.40.10.350 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 | 0.64 | 29.0 | 4.00e-01 | 81.9% | 82.4% |
| 3a35A02 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.59 | 29.0 | 3.94e-01 | 97.2% | 90.2% |
| 2cy5A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 22.0 | 2.62e-01 | 97.7% | 53.5% |
| 3h7lA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 28.0 | 3.71e-01 | 96.0% | 98.9% |
| 1vwxf00 | 2.40.10.190 | Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 | 0.50 | 29.0 | 3.54e-01 | 94.4% | 89.0% |
| 2kzbA00 | 2.60.40.2830 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 29.0 | 3.47e-01 | 91.5% | 86.0% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3247934 | 1.1.7.41 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom | 0.69 | 36.0 | 4.77e-01 | 94.4% | 92.6% |
| 3837954 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.63 | 33.0 | 4.32e-01 | 94.4% | 91.6% |
| 3969813 | 1.1.7.79 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_RND | 0.62 | 35.0 | 4.38e-01 | 94.4% | 91.4% |
| 3947204 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.57 | 36.0 | 4.13e-01 | 94.9% | 84.6% |
| 3949068 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.54 | 34.0 | 3.81e-01 | 94.4% | 78.6% |
| 4946954 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 32.0 | 3.91e-01 | 97.2% | 98.1% |
| 3526482 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.52 | 27.0 | 3.35e-01 | 85.3% | 80.0% |
| 4033579 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.52 | 35.0 | 4.14e-01 | 81.9% | 97.6% |
| 4121976 | 304.107.1.0 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain | 0.52 | 28.0 | 2.52e-01 | 87.6% | 35.0% |
| 3406310 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 33.0 | 3.88e-01 | 99.4% | 96.7% |
| 4225745 | 304.107.1.3 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › TrmE_N | 0.50 | 29.0 | 3.52e-01 | 91.5% | 87.0% |
D3
medium
residues 113-174_557-588
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d37A02 | 3.55.50.10 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains | 0.69 | 56.0 | 5.86e-01 | 100.0% | 95.3% |
| 1wruA02 | 3.55.50.10 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains | 0.69 | 57.0 | 5.94e-01 | 100.0% | 95.5% |
| 4jtmA00 | 3.55.50.30 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.67 | 52.0 | 5.58e-01 | 97.9% | 96.3% |
| 2v0cA03 | 2.30.210.10 | Mainly Beta › Roll › Leucyl-tRNA synthetase, domain 3 › Leucyl-tRNA synthetase, domain 3 | 0.56 | 30.0 | 3.63e-01 | 100.0% | 82.5% |
| 6fhpD00 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.56 | 36.0 | 4.14e-01 | 79.8% | 96.8% |
| 3ng2B00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.55 | 26.0 | 2.96e-01 | 84.0% | 56.7% |
| 2pmiB00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 38.0 | 2.99e-01 | 92.6% | 33.3% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4846239 | 3070.1.1.12 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › Gp44-like_2nd | 0.74 | 60.0 | 6.33e-01 | 100.0% | 95.2% |
| 3948879 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.74 | 56.0 | 6.25e-01 | 98.9% | 100.0% |
| 184487 | 3070.1.1.12 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › Gp44-like_2nd | 0.69 | 56.0 | 5.86e-01 | 100.0% | 95.3% |
| 185933 | 3070.1.1.12 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › Gp44-like_2nd | 0.69 | 57.0 | 5.94e-01 | 100.0% | 95.5% |
| 4957566 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.69 | 58.0 | 5.90e-01 | 100.0% | 93.3% |
| 3967020 | 3070.1.1.4 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › STN | 0.68 | 51.0 | 5.39e-01 | 97.9% | 88.2% |
| 3964700 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.67 | 52.0 | 5.58e-01 | 80.9% | 97.5% |
| 3974451 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.67 | 49.0 | 5.12e-01 | 94.7% | 84.7% |
| 4929757 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.65 | 60.0 | 5.68e-01 | 100.0% | 92.7% |
| 1070142 | 3070.1.1.11 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › type_II_gspD_N0 | 0.64 | 51.0 | 5.43e-01 | 97.9% | 97.5% |
| 3972187 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.58 | 44.0 | 4.63e-01 | 91.5% | 90.6% |
| 3397502 | 4012.4.1.0 ↗ | a+b two layers › SSHS domain › DPAGT1 insertion domain › DPAGT1 insertion domain | 0.58 | 23.0 | 3.50e-01 | 70.2% | 90.0% |
| 3395627 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.53 | 37.0 | 4.06e-01 | 93.6% | 92.0% |
| 3816885 | 320.4.1.0 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain | 0.52 | 35.0 | 3.35e-01 | 93.6% | 56.5% |
| 4927590 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.52 | 36.0 | 3.99e-01 | 74.5% | 97.1% |
| 4932995 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.52 | 23.0 | 2.89e-01 | 77.7% | 70.0% |
| 3236338 | 101.1.21.0 ↗ | alpha arrays › HTH › HTH › HTH in T7 RNA polymerase | 0.51 | 40.0 | 2.96e-01 | 86.2% | 40.8% |
| 5053842 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.51 | 36.0 | 3.44e-01 | 92.6% | 62.7% |
| 3170738 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.50 | 26.0 | 3.25e-01 | 96.8% | 95.6% |
D4
medium
residues 386-497
Domain cluster:
rep: MF001361.1__ASZ77376.1__X__00001__D369-485
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00877.26 best | NLPC_P60 | 81.3 | 6.60e-23 | 85.7% | 86.7% |
D5
medium
residues 630-717_761-766
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3it4B01 | 3.30.2330.10 | Alpha Beta › 2-Layer Sandwich › arginine biosynthesis bifunctional protein fold › arginine biosynthesis bifunctional protein suprefamily | 0.61 | 44.0 | 4.73e-01 | 93.6% | 89.9% |