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HM134276.1__ADJ55428.1__RB16p124__00124
Bact-VirHM134276.1__ADJ55428.1__RB16p124__00124
Identity
- Accession:
- HM134276 ↗
- Kingdom:
- phage
Quality
89.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Pseudotevenvirus›
Escherichia_phage_RB16
TaxID: 2681599
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 11-75
Domain cluster:
rep: MN508817.1__QFR55718.1__JC221_072__00072__D10-71
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6bogA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 50.0 | 5.55e-01 | 100.0% | 86.5% |
| 1wjrA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 56.0 | 4.49e-01 | 100.0% | 40.9% |
| 2rhiA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 53.0 | 4.38e-01 | 100.0% | 44.6% |
| 4c5eC02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 49.0 | 4.33e-01 | 100.0% | 50.0% |
| 3feoB02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 50.0 | 4.57e-01 | 100.0% | 59.0% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 46.0 | 4.41e-01 | 100.0% | 60.3% |
| 2rprA00 | 2.20.25.240 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.68 | 45.0 | 4.13e-01 | 87.7% | 51.7% |
| 3h8zA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 45.0 | 4.54e-01 | 100.0% | 68.8% |
| 2vobB02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.68 | 59.0 | 4.15e-01 | 100.0% | 33.6% |
| 3e1sA04 | 2.30.30.940 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 49.0 | 4.82e-01 | 100.0% | 72.5% |
| 5i4eA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.67 | 43.0 | 4.85e-01 | 83.1% | 91.3% |
| 3szeA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.67 | 51.0 | 3.25e-01 | 81.5% | 33.8% |
| 2mysA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.67 | 43.0 | 4.86e-01 | 100.0% | 89.6% |
| 3goxA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 46.0 | 5.03e-01 | 100.0% | 92.2% |
| 4ii1A02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 44.0 | 4.70e-01 | 100.0% | 80.4% |
| 3a2yA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.64 | 57.0 | 4.11e-01 | 100.0% | 38.9% |
| 2vb6A01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.64 | 44.0 | 4.73e-01 | 100.0% | 85.2% |
| 3c4sA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 45.0 | 4.73e-01 | 100.0% | 84.2% |
| 3fb9B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 48.0 | 4.47e-01 | 100.0% | 65.5% |
| 1wv4B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.61 | 46.0 | 3.56e-01 | 83.1% | 58.4% |
| 2in5A00 | 2.40.360.10 | Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like | 0.61 | 54.0 | 3.84e-01 | 100.0% | 81.5% |
| 1q1uA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.60 | 51.0 | 4.14e-01 | 100.0% | 92.8% |
| 4x9cD00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 39.0 | 4.09e-01 | 100.0% | 73.3% |
| 7afrX02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.59 | 41.0 | 4.21e-01 | 100.0% | 80.0% |
| 3nqkA02 | 2.40.128.440 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 | 0.57 | 47.0 | 3.73e-01 | 100.0% | 86.9% |
| 2hbpA00 | 2.30.30.700 | Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 | 0.56 | 40.0 | 4.02e-01 | 100.0% | 72.7% |
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.56 | 42.0 | 4.17e-01 | 100.0% | 77.6% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.56 | 46.0 | 3.79e-01 | 96.9% | 65.6% |
| 4rt0A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.56 | 41.0 | 3.54e-01 | 81.5% | 72.5% |
| 1x6bA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 42.0 | 4.23e-01 | 100.0% | 84.4% |
| 4iimA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 40.0 | 4.26e-01 | 100.0% | 91.2% |
| 1lckA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 41.0 | 4.27e-01 | 100.0% | 91.5% |
| 1ei5A03 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 44.0 | 3.91e-01 | 100.0% | 96.1% |
| 2p12A01 | 2.40.380.10 | Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like | 0.52 | 42.0 | 3.22e-01 | 92.3% | 54.0% |
| 1lfoA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 43.0 | 3.62e-01 | 100.0% | 99.2% |
| 1dwnA00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.52 | 44.0 | 3.55e-01 | 95.4% | 66.9% |
| 3e8lC00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 42.0 | 3.21e-01 | 100.0% | 86.9% |
| 4d6wA01 | 2.30.30.640 | Mainly Beta › Roll › SH3 type barrels. › Rhabdovirus spike glycoprotein G, lateral domain | 0.50 | 43.0 | 3.88e-01 | 100.0% | 98.9% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3484822 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.74 | 52.0 | 4.86e-01 | 100.0% | 60.0% |
| 3795121 | 4.1.1.110 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_FRX1 | 0.70 | 46.0 | 4.65e-01 | 100.0% | 67.7% |
| 5040907 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.69 | 53.0 | 3.53e-01 | 81.5% | 33.9% |
| 3928136 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 50.0 | 5.15e-01 | 100.0% | 85.0% |
| 3454710 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.67 | 51.0 | 3.48e-01 | 81.5% | 44.1% |
| 3451171 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 46.0 | 4.63e-01 | 100.0% | 73.8% |
| 3841414 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.65 | 47.0 | 4.67e-01 | 100.0% | 72.9% |
| 3922426 | 4.1.1.363 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet, Tudor_FRX1 | 0.64 | 47.0 | 3.88e-01 | 100.0% | 42.5% |
| 3236373 | 1.1.5.49 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 | 0.64 | 49.0 | 3.22e-01 | 81.5% | 31.1% |
| 1503651 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.64 | 47.0 | 4.43e-01 | 100.0% | 63.7% |
| 4015238 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.64 | 45.0 | 3.62e-01 | 100.0% | 38.4% |
| 3927795 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 48.0 | 4.98e-01 | 100.0% | 86.7% |
| 3933892 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 48.0 | 5.03e-01 | 100.0% | 88.3% |
| 3447771 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.63 | 48.0 | 3.25e-01 | 81.5% | 39.6% |
| 3795384 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 47.0 | 3.23e-01 | 100.0% | 23.7% |
| 3928711 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 44.0 | 4.00e-01 | 100.0% | 56.5% |
| 3231154 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 44.0 | 4.08e-01 | 100.0% | 60.0% |
| 3222818 | 1.1.17.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 | 0.61 | 47.0 | 3.09e-01 | 81.5% | 28.2% |
| 3339169 | 4.1.1.415 ↗ | beta barrels › SH3 › SH3 › SH3 › PNPOx_N | 0.61 | 44.0 | 4.15e-01 | 100.0% | 61.2% |
| 3960372 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.61 | 46.0 | 4.23e-01 | 81.5% | 84.7% |
| 3308545 | 4.1.1.140 ↗ | beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom | 0.61 | 44.0 | 3.24e-01 | 78.5% | 30.6% |
| 4287081 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.60 | 45.0 | 3.70e-01 | 83.1% | 72.8% |
| 3342793 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.58 | 50.0 | 3.60e-01 | 100.0% | 32.6% |
| 3710131 | 4.7.1.0 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 | 0.58 | 51.0 | 3.98e-01 | 100.0% | 54.9% |
| 3631165 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 50.0 | 4.57e-01 | 100.0% | 72.9% |
| 3357709 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.58 | 49.0 | 4.55e-01 | 100.0% | 72.9% |
| 4625654 | 4.1.1.445 ↗ | beta barrels › SH3 › SH3 › SH3 › Spore_GerQ | 0.57 | 41.0 | 3.96e-01 | 100.0% | 68.0% |
| 3700770 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 42.0 | 4.37e-01 | 100.0% | 86.7% |
| 3601070 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 45.0 | 4.60e-01 | 100.0% | 89.2% |
| 4463780 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.56 | 42.0 | 3.60e-01 | 83.1% | 79.1% |
| 3342814 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.56 | 49.0 | 4.36e-01 | 100.0% | 74.7% |
| 4214438 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.55 | 42.0 | 4.24e-01 | 100.0% | 80.0% |
| 3290160 | 4.1.1.323 ↗ | beta barrels › SH3 › SH3 › SH3 › WYL | 0.55 | 39.0 | 3.69e-01 | 100.0% | 62.5% |
| 3356605 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.54 | 48.0 | 4.33e-01 | 100.0% | 77.8% |
| 3834112 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.54 | 47.0 | 4.47e-01 | 100.0% | 88.7% |
| 4466506 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 44.0 | 4.20e-01 | 100.0% | 78.7% |
| 3645395 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.54 | 48.0 | 4.48e-01 | 100.0% | 87.5% |
| 4283343 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.53 | 43.0 | 4.06e-01 | 100.0% | 75.0% |
| 4083915 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.52 | 41.0 | 3.99e-01 | 100.0% | 74.7% |
| 3668420 | 4.1.1.140 ↗ | beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom | 0.52 | 46.0 | 3.35e-01 | 100.0% | 37.9% |
| 4069560 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 43.0 | 4.11e-01 | 100.0% | 78.7% |
| 3669214 | 4.1.1.140 ↗ | beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom | 0.52 | 46.0 | 3.70e-01 | 100.0% | 55.4% |
| 3357239 | 4.1.1.140 ↗ | beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom | 0.52 | 46.0 | 3.47e-01 | 100.0% | 44.9% |
| None | — | 0.51 | 46.0 | 2.81e-01 | 100.0% | 17.7% | |
| 4484974 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 42.0 | 3.88e-01 | 100.0% | 69.4% |
| 1545879 | 4.1.1.120 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_16 | 0.51 | 44.0 | 3.88e-01 | 100.0% | 99.0% |
| 3433009 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.51 | 45.0 | 3.01e-01 | 100.0% | 45.9% |
| 3425872 | 4.1.1.140 ↗ | beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom | 0.50 | 44.0 | 4.02e-01 | 100.0% | 80.0% |
| 4162968 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.50 | 42.0 | 3.98e-01 | 100.0% | 75.9% |
D2
medium
residues 78-121
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zb9A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.61 | 46.0 | 4.46e-01 | 88.6% | 72.0% |
| 1v9mA02 | 1.20.1690.10 | Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain | 0.59 | 50.0 | 3.85e-01 | 97.7% | 79.2% |
| 3tf8B00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.52 | 40.0 | 2.80e-01 | 97.7% | 33.2% |