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HM144385.1__ADH03065.1__X__00044

Bact-Vir

HM144385.1__ADH03065.1__X__00044

Identity

Accession:
HM144385 ↗
Kingdom:
phage

Quality

73.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Brochothrix_phage_NF5

TaxID: 764561

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-57
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.84 70.0 6.37e-01 95.9% 69.2%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 70.0 7.00e-01 98.0% 98.0%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 66.0 5.92e-01 98.0% 67.6%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 68.0 4.90e-01 98.0% 39.1%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.76 59.0 6.03e-01 95.9% 87.5%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 65.0 6.06e-01 95.9% 80.6%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 65.0 6.39e-01 95.9% 92.5%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 65.0 5.93e-01 95.9% 87.5%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 64.0 6.06e-01 98.0% 79.7%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 61.0 5.57e-01 95.9% 88.1%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.72 63.0 5.56e-01 100.0% 71.2%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 61.0 5.55e-01 93.9% 70.8%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 61.0 5.85e-01 95.9% 86.0%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 57.0 5.16e-01 89.8% 88.1%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 58.0 5.43e-01 95.9% 88.3%
4kujA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 55.0 4.04e-01 100.0% 96.0%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.65 53.0 4.69e-01 95.9% 64.9%
2a5hA03 6.20.120.40 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 39.0 3.66e-01 87.8% 50.0%
3bdlA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 47.0 3.32e-01 83.7% 63.3%
3mmyA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 50.0 3.06e-01 95.9% 13.6%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 48.0 3.43e-01 91.8% 42.9%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.60 49.0 4.51e-01 95.9% 74.2%
3afcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 49.0 2.87e-01 100.0% 19.4%
3ab1A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 48.0 3.65e-01 93.9% 95.2%
1q57G01 2.20.25.180 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 41.0 3.70e-01 83.7% 52.1%
1pfjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 45.0 3.66e-01 93.9% 63.9%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.57 46.0 4.07e-01 98.0% 97.5%
4ml0B00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.57 46.0 3.84e-01 93.9% 52.2%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.50e-01 89.8% 78.0%
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.54 45.0 3.18e-01 100.0% 28.6%
2b3yA05 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.54 44.0 2.85e-01 91.8% 91.1%
5j60B02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 45.0 3.47e-01 91.8% 93.3%
2bwnB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 45.0 3.18e-01 98.0% 61.0%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.53 40.0 3.96e-01 100.0% 80.4%
3oyyB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 41.0 3.96e-01 87.8% 91.4%
4z3xA03 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.52 44.0 3.03e-01 100.0% 30.6%
4c89C00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 40.0 2.46e-01 87.8% 26.3%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.51 40.0 3.49e-01 93.9% 91.7%
4hxfB02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 39.0 2.52e-01 87.8% 37.5%
3fnbA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 38.0 2.47e-01 83.7% 35.7%
2nykA02 2.60.40.2530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 40.0 3.44e-01 95.9% 90.8%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3926118 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.81 71.0 6.60e-01 95.9% 85.0%
4966163 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 69.0 5.93e-01 98.0% 61.3%
3510786 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.81 71.0 6.43e-01 95.9% 73.8%
1567496 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.80 69.0 6.55e-01 95.9% 84.2%
3942573 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 68.0 6.46e-01 95.9% 84.5%
3475807 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.79 68.0 5.77e-01 95.9% 83.7%
3936885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 68.0 6.21e-01 95.9% 72.3%
3500406 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.79 68.0 4.02e-01 95.9% 18.6%
3935469 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.78 67.0 5.96e-01 95.9% 74.3%
4069543 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.78 69.0 5.93e-01 98.0% 65.3%
3741020 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 66.0 5.91e-01 98.0% 67.1%
3928430 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.78 66.0 5.90e-01 95.9% 72.9%
3740208 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.78 67.0 6.16e-01 98.0% 75.4%
3251559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 67.0 6.68e-01 98.0% 94.0%
2727964 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.77 64.0 6.07e-01 95.9% 78.0%
4161673 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.76 64.0 5.31e-01 95.9% 54.1%
3448975 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.76 64.0 5.89e-01 95.9% 84.6%
3834390 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 65.0 6.48e-01 95.9% 94.0%
4238582 3174.2.1.1 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.75 67.0 6.28e-01 100.0% 86.7%
3702154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 65.0 5.64e-01 98.0% 65.3%
3848399 4.8.1.24 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th 0.74 63.0 5.60e-01 95.9% 75.7%
3888226 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.74 63.0 5.47e-01 95.9% 73.3%
1005326 3174.2.1.1 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.73 64.0 5.91e-01 100.0% 81.2%
3025579 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 59.0 5.59e-01 95.9% 93.3%
4120629 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 59.0 5.18e-01 95.9% 68.0%
4012002 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 60.0 5.33e-01 95.9% 81.4%
151019 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.70 60.0 5.05e-01 98.0% 57.6%
3737837 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 59.0 5.44e-01 98.0% 87.7%
4944045 4.17.1.2 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › Asparaginase 0.69 56.0 5.09e-01 95.9% 68.6%
5053906 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.68 56.0 5.30e-01 95.9% 81.7%
5056826 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.68 54.0 5.05e-01 95.9% 70.8%
4041343 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.68 54.0 5.45e-01 93.9% 94.0%
3172122 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 57.0 5.37e-01 95.9% 95.0%
5050320 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.68 53.0 4.80e-01 95.9% 61.3%
5081442 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.67 54.0 4.91e-01 95.9% 67.1%
4071824 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.67 53.0 4.79e-01 95.9% 66.7%
4971470 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.66 54.0 4.81e-01 95.9% 64.0%
4480519 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 53.0 5.00e-01 95.9% 73.3%
4948433 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.66 53.0 4.87e-01 95.9% 69.1%
3660755 4.8.1.21 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PTM_DIR17_Tudor 0.66 54.0 4.82e-01 95.9% 64.0%
3660244 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.65 54.0 4.74e-01 95.9% 64.0%
3725260 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 49.0 4.54e-01 95.9% 75.7%
5065184 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 44.0 4.51e-01 89.8% 95.6%
3615536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.00e-01 100.0% 74.1%
3591236 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 48.0 2.73e-01 100.0% 16.4%
4206425 2.1.1.48 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Elong-fact-P_C 0.58 45.0 4.28e-01 87.8% 91.5%
1297412 4312.1.1.10 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › YafQ_toxin 0.57 44.0 3.77e-01 91.8% 83.5%
3335638 708.1.2.11 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › STEEP1 0.57 41.0 3.50e-01 87.8% 77.0%
3388070 3174.2.1.1 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.57 45.0 4.35e-01 100.0% 85.0%
3842847 9.13.1.0 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.56 45.0 3.72e-01 100.0% 46.7%
4982571 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.54 43.0 4.14e-01 93.9% 98.3%
5058747 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.54 45.0 4.27e-01 95.9% 98.3%
3390600 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.53 44.0 3.91e-01 98.0% 86.7%
4939428 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.53 42.0 4.04e-01 95.9% 96.7%
3290541 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.53 42.0 4.02e-01 100.0% 87.7%
4987919 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.52 42.0 4.10e-01 95.9% 98.3%
3286940 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.51 37.0 2.85e-01 83.7% 63.6%
4998118 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.51 43.0 3.98e-01 100.0% 90.8%
4970510 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.50 42.0 3.90e-01 100.0% 90.8%