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HM144386.1__ADH03084.1__X__00005

Bact-Vir

HM144386.1__ADH03084.1__X__00005

Identity

Accession:
HM144386 ↗
Kingdom:
phage

Quality

68.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Brochothrix_phage_BL3

TaxID: 764562

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-60
PDB
Domain cluster: rep: MK448706.1__QBX15888.1__Javan221_0030__00023__D2-53
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 59.0 5.60e-01 100.0% 71.2%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 58.0 5.66e-01 98.2% 76.7%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 53.0 5.62e-01 96.4% 91.8%
1z5hA03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.68 43.0 3.90e-01 100.0% 49.3%
1vj2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 40.0 3.15e-01 100.0% 28.9%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 57.0 5.21e-01 100.0% 80.8%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 57.0 4.59e-01 100.0% 58.1%
3fzqA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.63 44.0 3.47e-01 73.2% 60.9%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.62 49.0 4.89e-01 100.0% 85.0%
1nf2A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.62 43.0 3.49e-01 71.4% 52.8%
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.61 51.0 4.62e-01 96.4% 81.0%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.61 39.0 3.85e-01 100.0% 59.0%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.59 44.0 3.78e-01 100.0% 50.0%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.58 51.0 3.65e-01 100.0% 46.1%
4uhiA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.57 39.0 2.40e-01 75.0% 96.5%
1ujrA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.57 46.0 4.20e-01 98.2% 80.7%
3lfkD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 45.0 3.64e-01 91.1% 82.7%
6qu3A02 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 43.0 3.00e-01 87.5% 89.6%
4ggmX02 3.40.140.80 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › LpxI C-terminal catalytic domain 0.54 42.0 3.15e-01 87.5% 97.3%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.54 40.0 4.09e-01 87.5% 83.6%
3ja8204 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 43.0 2.70e-01 92.9% 22.4%
4r7zA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 44.0 2.80e-01 94.6% 22.5%
3bz6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.64e-01 91.1% 87.8%
1hywA00 3.30.1580.10 Alpha Beta › 2-Layer Sandwich › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W 0.53 43.0 4.26e-01 100.0% 89.7%
2bb6A02 2.170.130.30 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › 0.53 45.0 3.74e-01 100.0% 83.0%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.53 40.0 3.05e-01 87.5% 52.3%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 43.0 4.21e-01 96.4% 93.8%
1wv3A01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 45.0 4.10e-01 100.0% 100.0%
4by6D02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 43.0 2.88e-01 92.9% 36.4%
1txoB00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 38.0 2.62e-01 82.1% 89.0%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.52 39.0 3.29e-01 89.3% 61.1%
3ttcA01 3.90.870.30 Alpha Beta › Alpha-Beta Complex › DHBP synthase › 0.52 44.0 3.03e-01 98.2% 67.3%
7l5aA02 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.52 33.0 2.51e-01 83.9% 27.0%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.43e-01 87.5% 97.8%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 42.0 3.93e-01 96.4% 88.0%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 2.68e-01 75.0% 85.0%
3votB02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 43.0 2.76e-01 96.4% 38.2%
1k3sA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 36.0 2.94e-01 75.0% 48.1%
1bymA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.51 42.0 3.66e-01 100.0% 68.0%
1bvyB00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.51 38.0 2.37e-01 91.1% 63.7%
3mdmA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.50 40.0 2.48e-01 98.2% 74.7%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5017559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 71.0 6.81e-01 100.0% 98.5%
3972526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 70.0 6.49e-01 100.0% 88.6%
4662294 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 59.0 6.03e-01 98.2% 83.6%
1263519 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.76 59.0 5.76e-01 100.0% 75.8%
5063433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 57.0 5.97e-01 100.0% 92.0%
4941512 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 56.0 5.20e-01 100.0% 65.7%
3036710 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 56.0 5.40e-01 100.0% 74.6%
4975764 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.72 55.0 5.12e-01 100.0% 67.1%
3303628 822.1.1.3 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_ATXR3 0.71 44.0 4.64e-01 100.0% 70.0%
5004476 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 55.0 5.24e-01 100.0% 72.3%
3602275 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.69 57.0 3.36e-01 94.6% 14.0%
4974211 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.67 52.0 5.12e-01 98.2% 80.0%
5033892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 58.0 5.52e-01 100.0% 83.1%
4028559 822.1.1.2 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.66 40.0 4.35e-01 100.0% 75.6%
3988217 241.12.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like 0.65 43.0 3.02e-01 100.0% 19.5%
4994897 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 46.0 3.55e-01 80.4% 71.9%
3588755 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 53.0 4.96e-01 100.0% 83.8%
3907235 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.63 43.0 2.87e-01 98.2% 17.8%
4945344 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 56.0 3.44e-01 100.0% 71.1%
3911194 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.62 52.0 4.68e-01 96.4% 83.7%
3252861 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.62 42.0 2.87e-01 98.2% 18.6%
3539015 4357.1.1.5 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_4 0.62 51.0 4.07e-01 96.4% 55.6%
4182977 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.62 42.0 4.19e-01 94.6% 68.3%
3617714 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.61 52.0 4.76e-01 98.2% 89.3%
4954114 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.61 50.0 4.95e-01 96.4% 100.0%
5048876 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.61 42.0 4.08e-01 100.0% 63.1%
3890078 4357.1.1.2 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_1 0.61 50.0 4.50e-01 96.4% 78.8%
4655745 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.61 54.0 4.45e-01 100.0% 94.0%
3880308 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.61 50.0 4.55e-01 96.4% 83.7%
3513328 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.61 47.0 4.41e-01 91.1% 70.0%
5022626 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.60 49.0 4.87e-01 94.6% 95.0%
3874516 206.1.1.74 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.60 41.0 2.55e-01 73.2% 18.2%
4573100 2484.1.1.206 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70, FGGY_C 0.59 49.0 3.44e-01 96.4% 35.8%
3277064 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 39.0 2.86e-01 92.9% 24.1%
3921414 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.57 47.0 4.35e-01 98.2% 83.5%
5003899 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.57 45.0 2.92e-01 89.3% 25.7%
3550992 2004.1.1.418 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.56 45.0 2.94e-01 89.3% 27.5%
3703312 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 46.0 2.78e-01 92.9% 18.5%
None — 0.56 44.0 2.71e-01 89.3% 19.0%
3481498 2004.1.1.418 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.56 45.0 2.92e-01 92.9% 25.6%
3594982 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.55 45.0 2.97e-01 92.9% 28.1%
4979123 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.55 39.0 2.77e-01 75.0% 23.9%
4030223 2004.1.1.418 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.55 45.0 2.91e-01 92.9% 27.8%
4029551 10.12.1.52 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_8 0.55 49.0 2.96e-01 100.0% 17.3%
3839782 2004.1.1.58 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase 0.55 45.0 2.94e-01 92.9% 26.5%
3653298 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.54 44.0 3.08e-01 92.9% 34.7%
3382056 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 43.0 2.56e-01 89.3% 16.0%
4933764 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.53 37.0 2.73e-01 75.0% 26.2%
5016962 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.53 41.0 2.76e-01 89.3% 30.0%
5031060 2.1.1.32 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TIP49 0.53 39.0 3.30e-01 87.5% 60.9%
3982462 4132.1.1.1 ↗ alpha bundles › IpaD-like › IpaD-like › IpaD-like › T3SS_TC 0.53 36.0 2.37e-01 75.0% 41.7%
1245251 2.1.1.32 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TIP49 0.52 39.0 3.34e-01 89.3% 64.5%
5004012 2004.1.1.714 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_13 0.52 45.0 2.84e-01 100.0% 39.1%
3593065 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 40.0 3.36e-01 100.0% 46.1%
5006749 2003.1.3.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › CoA_transf_3 0.51 35.0 2.17e-01 71.4% 94.8%
1032602 4.1.1.127 ↗ beta barrels › SH3 › SH3 › SH3 › DtxR 0.51 42.0 3.66e-01 100.0% 68.0%