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HM144386.1__ADH03145.1__X__00066

Bact-Vir

HM144386.1__ADH03145.1__X__00066

Identity

Accession:
HM144386 ↗
Kingdom:
phage

Quality

74.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Brochothrix_phage_BL3

TaxID: 764562

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-59
PDB
Domain cluster: rep: KX190835.1__ANT40106.1__BMBtpLA4_12__00012__D2-56
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ooxA00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.59 52.0 3.28e-01 100.0% 22.6%
2uv8A06 3.30.70.2490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 38.0 3.69e-01 100.0% 56.7%
4chkB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 47.0 4.14e-01 96.4% 85.7%
1hqz800 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.57 44.0 3.43e-01 87.5% 81.1%
1twfA04 3.30.1490.180 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase ii 0.57 45.0 4.45e-01 100.0% 98.4%
1wtjA03 3.30.60.50 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Hypothetical oxidoreductase yiak; domain 3 0.56 39.0 4.11e-01 83.9% 87.8%
1yb3A00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 44.0 3.39e-01 100.0% 45.5%
1lktA00 2.170.14.10 Mainly Beta › Beta Complex › Tailspike Protein; Chain › Phage P22 tailspike-like, N-terminal domain 0.55 43.0 3.65e-01 89.3% 70.2%
2kkcA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 47.0 3.99e-01 100.0% 88.0%
3vpbA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.54 43.0 4.11e-01 98.2% 97.1%
4kh9A03 2.60.120.1370 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.67e-01 96.4% 75.2%
2r9qA02 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.52 41.0 3.09e-01 94.6% 97.5%
7agvB01 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.51 41.0 3.81e-01 100.0% 77.8%
3purA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 39.0 3.62e-01 85.7% 81.1%
5k2mA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.50 39.0 3.82e-01 98.2% 100.0%
1rw1A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 41.0 3.42e-01 100.0% 81.6%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3904402 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 54.0 4.66e-01 89.3% 87.8%
4928815 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 52.0 5.02e-01 89.3% 89.2%
3401480 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.64 46.0 4.29e-01 87.5% 61.4%
4945544 7587.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases 0.60 50.0 3.95e-01 100.0% 80.0%
3593442 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 50.0 4.21e-01 100.0% 70.5%
3563605 109.4.1.1145 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IQ 0.59 42.0 2.42e-01 75.0% 13.0%
3926235 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 46.0 4.26e-01 96.4% 95.0%
3600927 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 46.0 3.77e-01 96.4% 60.8%
3516581 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 4.08e-01 100.0% 69.5%
3230409 221.1.1.92 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SL4P 0.57 46.0 4.23e-01 96.4% 87.5%
3556111 275.1.1.1 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 0.57 47.0 4.53e-01 98.2% 98.5%
3500029 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.56 45.0 4.42e-01 100.0% 93.8%
3483611 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 49.0 4.22e-01 100.0% 83.3%
3621516 221.1.1.36 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.56 45.0 3.66e-01 94.6% 64.2%
3563038 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 47.0 3.87e-01 100.0% 83.6%
3172253 2004.1.1.212 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Microtub_bd 0.55 46.0 2.89e-01 100.0% 30.1%
3594304 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.55 39.0 2.60e-01 78.6% 17.3%
3711495 4951.1.1.1 ↗ alpha arrays › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_2 0.55 42.0 4.23e-01 98.2% 100.0%
3229211 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.55 45.0 3.93e-01 94.6% 86.7%
3973637 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 46.0 3.89e-01 100.0% 97.0%
3491800 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 38.0 3.06e-01 78.6% 35.4%
3330697 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 46.0 3.69e-01 100.0% 64.2%
3267982 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 44.0 4.00e-01 94.6% 92.5%
3236131 4027.1.1.0 ↗ beta barrels › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit 0.54 34.0 3.79e-01 73.2% 90.0%
3519231 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.54 40.0 2.87e-01 83.9% 56.9%
3222232 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.53 41.0 2.85e-01 85.7% 71.6%
3237223 2004.1.1.47 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › G-alpha 0.52 43.0 2.91e-01 100.0% 25.1%
3937822 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.52 45.0 3.76e-01 100.0% 94.0%
5037338 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.52 38.0 2.58e-01 85.7% 69.1%
1682921 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.50 38.0 3.51e-01 85.7% 78.2%