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HM144387.1__ADH03191.1__X__00045

Bact-Vir

HM144387.1__ADH03191.1__X__00045

Identity

Accession:
HM144387 ↗
Kingdom:
phage

Quality

94.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Wphvirus› Bacillus_phage_W.Ph.

TaxID: 764595

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-83
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 48.0 4.98e-01 81.5% 80.3%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 44.0 4.61e-01 92.6% 74.0%
3tjtA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.62 42.0 4.46e-01 84.0% 81.7%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.60 45.0 4.23e-01 96.3% 64.6%
3rkgA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.60 43.0 3.41e-01 75.3% 78.0%
3geeA02 1.20.120.430 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 0.60 42.0 3.39e-01 75.3% 69.0%
4azcA02 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.59 30.0 3.49e-01 77.8% 67.8%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.59 42.0 4.07e-01 90.1% 66.7%
1nt4A02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.58 48.0 4.01e-01 92.6% 81.6%
3smtA02 3.90.1420.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain 0.56 43.0 3.44e-01 97.5% 40.9%
2vkhA03 1.10.10.1780 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 38.0 4.02e-01 71.6% 91.3%
4xxiA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.54 44.0 3.76e-01 95.1% 78.2%
1j1jA01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.54 46.0 3.86e-01 91.4% 56.8%
1ewrA02 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.53 40.0 3.59e-01 81.5% 91.6%
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 40.0 3.20e-01 82.7% 90.0%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3232649 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.80 41.0 3.79e-01 86.4% 42.0%
3975961 5058.1.1.88 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_TM1 0.78 43.0 3.95e-01 85.2% 44.0%
4016635 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.71 42.0 3.95e-01 91.4% 48.0%
4964238 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.68 39.0 4.04e-01 82.7% 61.3%
5040843 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.68 51.0 4.81e-01 95.1% 66.3%
3603645 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.66 57.0 5.41e-01 100.0% 81.1%
3256598 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.65 42.0 3.99e-01 92.6% 55.8%
3598924 4156.1.1.0 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.62 46.0 3.78e-01 80.2% 63.9%
4300676 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.61 44.0 3.90e-01 88.9% 54.5%
4359654 605.2.1.3 ↗ alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N 0.60 43.0 3.83e-01 88.9% 54.5%
4963586 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.59 49.0 4.14e-01 87.7% 85.4%
4175087 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.59 42.0 3.76e-01 88.9% 54.5%
3935599 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.56 48.0 3.57e-01 92.6% 76.5%
5013240 101.1.2.674 ↗ alpha arrays › HTH › HTH › winged helix domain › PF29648 0.53 43.0 4.28e-01 91.4% 85.9%
3283074 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.52 39.0 3.94e-01 85.2% 87.1%
3672993 150.5.1.6 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › DUF3082 0.51 40.0 3.54e-01 82.7% 58.3%
4289864 601.25.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain 0.50 46.0 3.68e-01 98.8% 56.0%