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HM144387.1__ADH03275.1__X__00133

Bact-Vir

HM144387.1__ADH03275.1__X__00133

Identity

Accession:
HM144387 ↗
Kingdom:
phage

Quality

87.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Wphvirus› Bacillus_phage_W.Ph.

TaxID: 764595

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-74
PDB
Domain cluster: rep: KT151959.1__ALA47923.1__SUNDANCE_107__00107__D115-175
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.82 60.0 6.36e-01 100.0% 87.9%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 57.0 5.71e-01 100.0% 72.1%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 59.0 5.78e-01 100.0% 71.8%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 54.0 5.31e-01 100.0% 66.7%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.79 58.0 5.69e-01 100.0% 70.8%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 55.0 5.52e-01 100.0% 72.7%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 63.0 6.18e-01 100.0% 82.9%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 53.0 5.64e-01 97.0% 81.4%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 59.0 6.11e-01 100.0% 87.1%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 52.0 5.65e-01 100.0% 88.7%
2gtjA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 63.0 6.06e-01 100.0% 79.7%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.76 53.0 6.03e-01 100.0% 100.0%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 59.0 5.42e-01 100.0% 65.1%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 60.0 6.31e-01 100.0% 96.7%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 58.0 5.44e-01 100.0% 68.8%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 60.0 5.68e-01 100.0% 74.4%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 59.0 6.08e-01 100.0% 91.9%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 59.0 5.94e-01 100.0% 87.9%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 54.0 5.37e-01 100.0% 75.7%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.72 59.0 6.05e-01 100.0% 92.1%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 61.0 6.15e-01 100.0% 94.0%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 62.0 6.20e-01 100.0% 93.9%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 59.0 5.99e-01 100.0% 95.3%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 63.0 6.35e-01 98.5% 100.0%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 54.0 4.80e-01 100.0% 62.0%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 55.0 5.53e-01 98.5% 89.7%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.66 54.0 5.21e-01 100.0% 78.4%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 45.0 4.75e-01 100.0% 83.9%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 46.0 4.96e-01 100.0% 89.1%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 47.0 5.03e-01 100.0% 90.9%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 56.0 5.53e-01 100.0% 90.0%
3pvlA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 53.0 5.09e-01 98.5% 78.9%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 42.0 4.28e-01 89.4% 71.2%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 43.0 4.36e-01 89.4% 73.1%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.42e-01 100.0% 70.1%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.61 43.0 4.60e-01 95.5% 89.3%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.60 43.0 2.84e-01 100.0% 16.9%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.60 52.0 4.13e-01 100.0% 47.7%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 41.0 4.17e-01 89.4% 74.2%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 49.0 4.65e-01 90.9% 94.9%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 39.0 4.26e-01 90.9% 92.2%
2dt4A00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.57 52.0 4.01e-01 100.0% 49.0%
6jy5B00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.57 39.0 3.67e-01 87.9% 57.3%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 40.0 4.26e-01 93.9% 89.3%
2vnuD04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 40.0 3.80e-01 74.2% 98.7%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 40.0 4.35e-01 95.5% 98.1%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 41.0 3.27e-01 100.0% 39.7%
1aorA02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.55 34.0 2.48e-01 93.9% 22.0%
8gn6A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 46.0 2.95e-01 95.5% 33.7%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 38.0 4.09e-01 95.5% 96.1%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 3.87e-01 92.4% 64.7%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 39.0 4.02e-01 89.4% 81.2%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 40.0 4.10e-01 95.5% 85.9%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 46.0 2.85e-01 98.5% 42.0%
3dorA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 45.0 3.83e-01 93.9% 82.2%
3hwuA00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.53 43.0 3.56e-01 100.0% 52.8%
5wtzA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.53 38.0 2.75e-01 78.8% 38.0%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 42.0 2.73e-01 92.4% 23.0%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.51 39.0 3.95e-01 93.9% 87.5%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4998870 4.1.1.483 ↗ beta barrels › SH3 › SH3 › SH3 › RRXRR 0.91 58.0 5.23e-01 100.0% 50.6%
4024411 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 53.0 5.77e-01 100.0% 76.4%
4241924 4.1.1.93 ↗ beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.85 61.0 5.45e-01 100.0% 55.6%
3621818 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.84 57.0 6.39e-01 100.0% 92.0%
4271974 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.84 62.0 6.31e-01 100.0% 79.7%
4025829 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 61.0 6.64e-01 100.0% 90.9%
3938589 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.82 55.0 6.27e-01 100.0% 92.0%
3475462 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.81 61.0 5.54e-01 100.0% 61.2%
3597255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 59.0 5.40e-01 100.0% 60.0%
5073368 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 61.0 6.03e-01 100.0% 75.7%
5022848 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 60.0 6.30e-01 100.0% 86.7%
3741680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 59.0 6.37e-01 100.0% 92.7%
3518475 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 55.0 5.39e-01 100.0% 67.1%
145285 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.79 56.0 5.63e-01 100.0% 74.2%
3482676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 64.0 6.74e-01 100.0% 98.3%
3514867 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 61.0 5.90e-01 100.0% 74.7%
3482683 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 61.0 6.36e-01 100.0% 93.3%
1821014 4.1.1.70 ↗ beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.76 64.0 6.54e-01 100.0% 93.8%
2700914 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.76 54.0 5.05e-01 100.0% 61.3%
4147366 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.76 51.0 5.81e-01 100.0% 95.8%
4208181 4.1.1.70 ↗ beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.76 64.0 6.48e-01 100.0% 92.3%
5043533 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 60.0 6.14e-01 100.0% 89.1%
3494765 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.75 60.0 4.11e-01 100.0% 25.9%
4376886 4.1.1.241 ↗ beta barrels › SH3 › SH3 › SH3 › NifZ 0.74 67.0 6.28e-01 100.0% 86.3%
4505316 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 52.0 5.42e-01 100.0% 81.7%
4081631 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 59.0 5.68e-01 100.0% 77.3%
3554670 4.1.1.340 ↗ beta barrels › SH3 › SH3 › SH3 › PF28930 0.73 67.0 5.86e-01 100.0% 77.9%
4229837 4.1.1.354 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 0.72 64.0 4.54e-01 97.0% 38.9%
3781383 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 55.0 4.92e-01 100.0% 60.0%
1290375 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.71 64.0 6.41e-01 100.0% 100.0%
3930643 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 52.0 5.49e-01 100.0% 86.7%
3995431 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 63.0 6.05e-01 100.0% 86.7%
4093354 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 62.0 6.10e-01 100.0% 91.4%
3559960 2006.1.6.66 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF4537 0.70 55.0 5.41e-01 100.0% 80.0%
4207556 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.69 61.0 5.99e-01 100.0% 98.6%
5049556 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 49.0 4.06e-01 75.8% 93.3%
3591209 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 53.0 5.54e-01 86.4% 90.0%
3767452 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 59.0 5.03e-01 97.0% 85.5%
3587555 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 58.0 5.76e-01 100.0% 88.6%
3959531 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 51.0 5.07e-01 100.0% 77.1%
4291404 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 59.0 5.68e-01 100.0% 89.3%
4091791 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 58.0 5.55e-01 97.0% 86.7%
5039349 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 54.0 5.57e-01 97.0% 100.0%
3907176 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.66 56.0 5.13e-01 100.0% 71.1%
3500084 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 56.0 5.57e-01 100.0% 94.3%
3696482 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 47.0 4.24e-01 100.0% 59.6%
5013823 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.60 55.0 4.34e-01 100.0% 82.3%
5023617 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.60 51.0 4.03e-01 100.0% 45.9%
5062120 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 51.0 4.44e-01 100.0% 64.8%
4030846 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.58 53.0 4.12e-01 100.0% 51.9%
4965478 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.58 52.0 4.07e-01 100.0% 50.4%
4961450 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.57 52.0 4.08e-01 100.0% 48.9%
4941816 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.57 52.0 4.02e-01 100.0% 50.4%
4990656 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.57 51.0 4.02e-01 100.0% 50.7%
5056388 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.57 51.0 4.04e-01 100.0% 52.6%
3672926 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 34.0 2.36e-01 90.9% 17.3%
4034031 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.56 44.0 4.52e-01 100.0% 92.3%
3347210 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 4.00e-01 92.4% 95.5%
5065077 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.54 46.0 3.75e-01 100.0% 51.1%
3589473 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 45.0 4.29e-01 93.9% 78.8%
5063041 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.54 47.0 3.85e-01 100.0% 52.8%
3361883 1205.2.1.1 ↗ a+b two layers › C-terminal domain of CdiA toxin › C-terminal domain of P. aeruginosa CdiA › C-terminal domain of P. aeruginosa CdiA › PF31217 0.53 43.0 3.89e-01 93.9% 97.9%
3622841 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 41.0 2.62e-01 87.9% 83.4%
3704944 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 42.0 3.75e-01 92.4% 88.0%
3178590 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.52 47.0 2.83e-01 98.5% 24.4%
3704939 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 43.0 3.89e-01 93.9% 76.7%
3422528 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 39.0 4.10e-01 86.4% 93.3%