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HM144387.1__ADH03354.1__X__00216

Bact-Vir

HM144387.1__ADH03354.1__X__00216

Identity

Accession:
HM144387 ↗
Kingdom:
phage

Quality

92.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-51_119-134
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 46.0 4.55e-01 73.1% 62.0%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 47.0 3.96e-01 73.1% 42.0%
6obtA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.70 50.0 3.33e-01 76.1% 39.6%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.69 60.0 4.76e-01 97.0% 85.3%
2qguA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 45.0 3.98e-01 70.1% 51.5%
8hpoK01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 55.0 3.35e-01 89.6% 27.1%
2oq8A00 2.60.40.2930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 54.0 4.17e-01 89.6% 73.3%
3wa2X01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 50.0 4.65e-01 89.6% 63.2%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.66 45.0 3.44e-01 74.6% 31.5%
3esiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.66 46.0 3.76e-01 73.1% 82.3%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.66 51.0 3.73e-01 83.6% 36.3%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.66 57.0 3.61e-01 97.0% 57.0%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.65 53.0 4.04e-01 88.1% 40.7%
5kkuD00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.65 49.0 3.24e-01 82.1% 65.5%
5ay6A01 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.64 52.0 3.89e-01 89.6% 87.7%
2w5nA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.64 51.0 3.23e-01 89.6% 87.7%
5c2vB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 57.0 3.58e-01 100.0% 44.3%
5tf2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 53.0 3.36e-01 92.5% 36.7%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.63 51.0 4.45e-01 89.6% 100.0%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.63 50.0 3.72e-01 86.6% 39.2%
2oa9B02 3.30.70.3570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain 0.62 48.0 3.91e-01 83.6% 67.7%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.62 45.0 4.15e-01 98.5% 59.8%
3eliA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 42.0 3.31e-01 71.6% 53.5%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 50.0 3.26e-01 89.6% 74.9%
3g0kA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 48.0 3.88e-01 85.1% 83.6%
2owpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 49.0 3.93e-01 91.0% 45.0%
2e5aA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.61 41.0 3.76e-01 74.6% 51.6%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.60 43.0 4.53e-01 76.1% 85.0%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 44.0 3.44e-01 76.1% 40.0%
4g79A00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.60 47.0 3.78e-01 85.1% 65.7%
1vprA03 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 44.0 3.41e-01 92.5% 34.4%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.60 48.0 3.84e-01 91.0% 98.6%
3wmyA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 51.0 3.31e-01 95.5% 41.4%
1yr2A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.59 49.0 3.15e-01 92.5% 29.3%
2g30A01 2.60.40.1150 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 44.0 3.76e-01 85.1% 99.1%
1e2rA02 2.140.10.20 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 0.58 49.0 2.98e-01 94.0% 46.1%
4ufcA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.58 51.0 3.27e-01 100.0% 63.2%
3f40A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 40.0 3.48e-01 74.6% 80.2%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 41.0 3.37e-01 76.1% 48.0%
1z94B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 40.0 3.19e-01 73.1% 42.7%
2gfgA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.57 43.0 3.19e-01 83.6% 44.5%
4dokA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.57 45.0 3.51e-01 88.1% 85.2%
2durB01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 49.0 3.44e-01 100.0% 82.5%
2nykA01 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.56 45.0 3.60e-01 94.0% 82.4%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 45.0 3.23e-01 95.5% 98.7%
1lj5A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.55 43.0 3.34e-01 86.6% 68.8%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.54 40.0 4.17e-01 97.0% 85.7%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.53 43.0 3.42e-01 91.0% 63.6%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.53 41.0 4.37e-01 100.0% 94.9%
1e69A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 40.0 2.66e-01 80.6% 41.1%
4bd4A00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.53 44.0 3.78e-01 92.5% 73.4%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 43.0 3.80e-01 95.5% 82.1%
5t5lA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.14e-01 98.5% 98.7%
2l2nA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 38.0 3.79e-01 80.6% 76.1%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.51 40.0 3.19e-01 98.5% 40.7%
1d8hA00 3.20.100.10 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like 0.51 34.0 2.37e-01 73.1% 39.6%
ECOD (91)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3212707 5.1.3.9 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › OLF 0.75 60.0 4.01e-01 85.1% 27.9%
4929282 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.71 52.0 5.06e-01 95.5% 69.3%
3682839 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.70 57.0 3.65e-01 88.1% 36.5%
3422280 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.70 51.0 4.27e-01 76.1% 89.9%
4545039 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.70 49.0 4.86e-01 73.1% 71.4%
3601320 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.70 48.0 4.19e-01 71.6% 55.0%
5045854 243.5.1.0 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.70 54.0 5.07e-01 100.0% 68.8%
3502608 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.70 58.0 3.52e-01 89.6% 64.3%
3455144 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.70 48.0 5.38e-01 76.1% 96.0%
1678533 243.3.1.10 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YPEB_PepSY1-2 0.70 48.0 4.76e-01 74.6% 68.6%
3988158 12.3.1.21 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hyd_65N_2 0.69 50.0 3.23e-01 76.1% 42.8%
4464657 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.69 46.0 4.36e-01 88.1% 57.5%
3660574 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.69 59.0 3.65e-01 94.0% 35.1%
3622366 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.69 48.0 5.33e-01 76.1% 98.0%
3287377 1185.1.1.0 a+b two layers › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae 0.69 48.0 4.02e-01 74.6% 99.2%
4027923 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 56.0 3.22e-01 88.1% 21.8%
4926940 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.68 54.0 3.94e-01 85.1% 33.7%
3623154 5.1.4.436 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, PQQ_2, Beta-prop_EMC1_N 0.68 58.0 3.24e-01 92.5% 9.4%
3225189 5.1.4.369 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, Beta-prop_EMC1_N 0.68 58.0 3.21e-01 92.5% 8.9%
3040855 12.3.1.21 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hyd_65N_2 0.68 49.0 3.33e-01 76.1% 45.4%
3680499 5.1.4.369 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, Beta-prop_EMC1_N 0.68 58.0 3.21e-01 94.0% 21.5%
4308195 71.1.1.1 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Ependymin 0.68 48.0 3.46e-01 74.6% 28.9%
5059920 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.68 57.0 5.12e-01 91.0% 76.7%
4424927 243.5.1.4 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › AGAO-like_N2 0.68 53.0 4.74e-01 85.1% 68.4%
3421020 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.67 56.0 3.93e-01 92.5% 41.8%
3179848 241.15.1.2 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.67 49.0 3.80e-01 76.1% 39.6%
3685667 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.67 52.0 4.33e-01 85.1% 61.7%
3272565 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.67 58.0 3.53e-01 94.0% 29.7%
3791220 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.67 49.0 4.03e-01 79.1% 81.5%
3935052 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.66 57.0 4.62e-01 97.0% 94.6%
3450584 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.66 56.0 3.60e-01 94.0% 52.4%
3650512 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.66 55.0 3.56e-01 92.5% 26.9%
3848556 5.1.4.417 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › KNTC1_N 0.66 60.0 3.65e-01 100.0% 28.1%
3248011 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.66 56.0 3.56e-01 94.0% 34.8%
3928054 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.66 46.0 3.05e-01 73.1% 19.2%
1949057 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.66 44.0 3.63e-01 73.1% 38.5%
3357481 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.66 50.0 2.92e-01 82.1% 37.2%
4888666 243.5.1.4 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › AGAO-like_N2 0.66 55.0 4.87e-01 92.5% 69.8%
1140350 241.15.1.2 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.65 52.0 3.95e-01 88.1% 37.4%
3441510 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 55.0 3.66e-01 94.0% 49.6%
3466257 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.65 55.0 3.50e-01 94.0% 23.8%
4029311 5.1.4.73 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RAB3GAP2_N 0.65 55.0 3.47e-01 94.0% 23.2%
3736626 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.65 50.0 4.11e-01 85.1% 59.2%
5003966 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.65 45.0 4.55e-01 71.6% 73.8%
3232016 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.65 51.0 4.04e-01 86.6% 78.6%
3383121 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.65 55.0 3.51e-01 92.5% 32.7%
3434817 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.65 47.0 3.96e-01 79.1% 86.7%
3305683 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 55.0 3.44e-01 94.0% 43.5%
3228242 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.65 50.0 4.43e-01 85.1% 73.0%
3499652 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.64 51.0 3.35e-01 86.6% 41.1%
3743793 5.1.4.39 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 0.64 54.0 3.31e-01 94.0% 30.9%
3277546 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.64 50.0 4.14e-01 85.1% 83.3%
3308935 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.64 55.0 3.49e-01 95.5% 24.1%
3649825 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.64 47.0 2.97e-01 82.1% 15.0%
5062844 5.1.3.26 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 0.64 54.0 3.47e-01 95.5% 55.7%
4091266 5.1.11.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A 0.63 57.0 3.28e-01 100.0% 21.7%
None 0.63 57.0 3.33e-01 100.0% 24.6%
3484248 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.63 48.0 4.05e-01 85.1% 64.2%
3685128 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.62 56.0 3.25e-01 100.0% 22.3%
3275356 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 52.0 3.22e-01 94.0% 27.2%
4929327 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.62 52.0 4.73e-01 94.0% 68.9%
3441723 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.62 53.0 3.52e-01 97.0% 29.3%
4847379 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.62 52.0 3.34e-01 91.0% 22.8%
3272573 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.62 50.0 4.82e-01 95.5% 77.3%
3936442 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 53.0 4.69e-01 97.0% 98.0%
3698170 5.1.3.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.62 53.0 3.33e-01 100.0% 37.2%
3286735 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.62 50.0 4.66e-01 95.5% 70.6%
3924939 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.61 49.0 4.16e-01 89.6% 66.1%
None 0.61 50.0 3.16e-01 95.5% 19.5%
3513884 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.61 55.0 3.93e-01 100.0% 40.5%
4827588 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.61 44.0 3.29e-01 76.1% 30.5%
3577440 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.61 48.0 4.01e-01 85.1% 62.6%
4929426 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 53.0 3.14e-01 98.5% 53.1%
2644388 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 42.0 3.37e-01 73.1% 83.1%
3929256 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.60 49.0 4.04e-01 98.5% 99.3%
3431417 9.2.1.4 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF2921_N 0.59 48.0 3.73e-01 86.6% 52.9%
3672663 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.58 49.0 3.16e-01 95.5% 36.9%
4160858 241.1.1.2 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.57 47.0 3.69e-01 92.5% 75.2%
4952360 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.56 43.0 2.65e-01 83.6% 28.5%
3482157 5.1.11.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 0.56 48.0 2.90e-01 98.5% 19.8%
3734223 12.3.1.21 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hyd_65N_2 0.56 48.0 3.13e-01 95.5% 52.7%
3394892 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.55 49.0 3.47e-01 100.0% 51.4%
4114695 10.1.1.2 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.55 46.0 3.17e-01 98.5% 89.5%
3245739 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 43.0 3.33e-01 89.6% 64.7%
5080405 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.55 42.0 3.27e-01 85.1% 69.5%
3425789 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.54 43.0 2.89e-01 95.5% 33.8%
4982423 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.53 39.0 2.74e-01 83.6% 35.7%
3490071 71.2.1.4 beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N 0.53 47.0 3.22e-01 100.0% 29.8%
3989856 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.51 40.0 3.28e-01 89.6% 86.4%
5009292 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.51 40.0 2.82e-01 88.1% 36.3%
4992208 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.50 37.0 2.63e-01 83.6% 33.6%
D2 medium residues 52-118
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.77 68.0 5.40e-01 100.0% 58.6%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.71 50.0 3.82e-01 73.1% 35.6%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.69 49.0 3.79e-01 73.1% 40.0%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.69 47.0 3.64e-01 70.1% 38.4%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.68 51.0 5.38e-01 80.6% 91.7%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.67 46.0 2.90e-01 71.6% 31.0%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.67 46.0 3.60e-01 71.6% 59.3%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.65 49.0 5.05e-01 80.6% 93.7%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.64 48.0 4.99e-01 80.6% 91.7%
4dlqA03 2.60.220.50 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › 0.63 51.0 3.68e-01 89.6% 58.6%
3devA02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.63 46.0 3.88e-01 79.1% 56.0%
2ykfA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 45.0 3.57e-01 80.6% 40.4%
2qv8A00 3.55.40.10 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain 0.60 47.0 3.75e-01 88.1% 100.0%
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 46.0 2.98e-01 83.6% 76.2%
3ms6A00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.60 43.0 3.89e-01 76.1% 56.7%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 51.0 3.59e-01 100.0% 76.5%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 38.0 3.33e-01 79.1% 42.9%
6qm7A00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.58 44.0 3.05e-01 83.6% 38.5%
1n7vA01 2.105.10.10 Mainly Beta › 3 Propeller › Pseudo beta propeller › Pseudo beta propeller 0.58 46.0 3.48e-01 89.6% 68.9%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 50.0 3.32e-01 98.5% 40.8%
2ichA02 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.58 42.0 3.41e-01 77.6% 40.0%
2ml5A00 3.10.450.410 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 40.0 3.09e-01 73.1% 34.8%
1q57G01 2.20.25.180 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 41.0 3.99e-01 86.6% 68.5%
3u1kC01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.57 41.0 2.95e-01 79.1% 59.7%
4s1hA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.57 49.0 3.30e-01 100.0% 44.6%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.57 48.0 4.09e-01 95.5% 58.1%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 49.0 3.88e-01 98.5% 77.1%
1uuzB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.56 47.0 3.80e-01 92.5% 62.5%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 43.0 3.90e-01 85.1% 73.7%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.56 45.0 4.23e-01 94.0% 81.0%
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.56 44.0 4.07e-01 94.0% 66.3%
4zm3B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 38.0 2.98e-01 91.0% 33.1%
3rt0C00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 43.0 3.23e-01 86.6% 42.4%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.55 49.0 3.83e-01 100.0% 90.2%
1v0fA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 46.0 2.99e-01 100.0% 57.9%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.54 45.0 2.92e-01 94.0% 62.3%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.53 37.0 3.53e-01 74.6% 94.0%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.53 45.0 4.22e-01 92.5% 86.6%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.52 42.0 3.70e-01 89.6% 75.5%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 42.0 3.51e-01 86.6% 58.8%
1fuwA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 44.0 4.03e-01 95.5% 98.9%
8aa0E01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 41.0 2.80e-01 94.0% 78.1%
2r11D00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 38.0 2.51e-01 79.1% 72.6%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 44.0 3.01e-01 100.0% 81.7%
1e69A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 41.0 2.83e-01 91.0% 25.1%
2z6oA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.50 41.0 3.27e-01 100.0% 78.3%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3483806 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.78 70.0 5.36e-01 100.0% 62.0%
3866695 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.76 66.0 5.10e-01 100.0% 61.3%
3929256 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.75 66.0 5.22e-01 100.0% 54.3%
3364063 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.74 64.0 5.13e-01 100.0% 52.1%
3890928 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.74 65.0 4.78e-01 100.0% 60.6%
3939294 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.69 47.0 2.91e-01 70.1% 12.7%
3199763 220.1.1.202 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N 0.69 47.0 3.82e-01 71.6% 46.4%
5045339 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.69 47.0 2.99e-01 71.6% 27.8%
6336 331.13.1.1 a+b two layers › TBP-like › YwmB-like › YwmB-like › DUF1779 0.67 46.0 3.23e-01 71.6% 40.5%
3420606 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.66 60.0 3.71e-01 100.0% 41.5%
4176400 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.65 54.0 5.21e-01 92.5% 81.3%
4955365 223.1.1.27 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.63 48.0 3.89e-01 82.1% 43.7%
3687000 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.63 47.0 3.17e-01 80.6% 25.3%
4464658 274.1.1.59 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGG 0.61 52.0 4.43e-01 95.5% 60.5%
3968112 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.61 42.0 3.30e-01 73.1% 32.5%
5079197 375.1.1.298 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_HMPTM 0.60 42.0 4.75e-01 86.6% 100.0%
3216442 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.60 51.0 3.57e-01 100.0% 30.0%
3822567 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.59 52.0 3.34e-01 97.0% 95.5%
4946506 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 43.0 4.17e-01 76.1% 89.3%
4945822 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.58 44.0 3.73e-01 85.1% 91.2%
3640334 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.58 41.0 3.49e-01 76.1% 81.7%
5041343 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 44.0 4.28e-01 82.1% 90.7%
4464657 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.58 47.0 4.48e-01 94.0% 77.5%
3502994 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.56 48.0 3.91e-01 97.0% 53.8%
3438388 331.4.1.2 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.56 44.0 3.52e-01 86.6% 80.0%
3278560 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 44.0 3.74e-01 91.0% 64.2%
4937366 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.55 45.0 4.08e-01 91.0% 82.1%
5074371 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 46.0 3.69e-01 95.5% 56.6%
3670595 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 39.0 3.50e-01 95.5% 52.6%
3553623 719.1.1.2 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.55 46.0 3.71e-01 91.0% 98.4%
4491189 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.55 46.0 3.94e-01 91.0% 81.0%
3719143 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.55 45.0 3.69e-01 95.5% 85.2%
4944318 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 46.0 3.70e-01 98.5% 52.1%
1349043 5.1.3.33 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF5074 0.54 45.0 3.00e-01 100.0% 97.3%
5065158 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 45.0 3.56e-01 94.0% 54.0%
4669968 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.54 46.0 3.98e-01 98.5% 62.8%
3493300 331.9.1.9 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF26171 0.54 42.0 3.43e-01 88.1% 78.5%
4992208 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.54 43.0 3.07e-01 95.5% 72.8%
3313558 3887.2.1.1 a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.54 40.0 3.47e-01 82.1% 76.4%
3257727 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.53 44.0 3.58e-01 91.0% 55.4%
4029539 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 43.0 3.61e-01 91.0% 52.5%
4537309 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.53 40.0 3.59e-01 82.1% 57.9%
3728267 244.1.1.35 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › NAD_binding_8 0.53 43.0 3.34e-01 89.6% 51.4%
5052577 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 42.0 3.39e-01 86.6% 51.5%
4220479 223.1.1.45 a+b three layers › Profilin-like › sensor domains › sensor domains › GdpP_PAS 0.52 36.0 2.60e-01 74.6% 22.3%
4947550 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 40.0 3.32e-01 86.6% 54.6%
3663339 331.4.1.7 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › DUF1499 0.51 38.0 3.01e-01 83.6% 47.7%
5049111 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 41.0 3.52e-01 97.0% 60.8%
3191562 5.1.4.229 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EMC1_N 0.50 41.0 2.60e-01 98.5% 36.9%
1715901 5.1.2.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_130 0.50 42.0 2.74e-01 100.0% 44.5%