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HM151342.1__ADK73425.1__RDJLphi1_gp24__00024

Bact-Vir

HM151342.1__ADK73425.1__RDJLphi1_gp24__00024

Identity

Accession:
HM151342 ↗
Kingdom:
phage

Quality

85.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xiamenvirus› Roseobacter_phage_RDJL_Phi_1

TaxID: 562742

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-71
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y1aA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 35.0 3.20e-01 81.0% 49.4%
4kreA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 43.0 2.94e-01 98.4% 94.6%
7o1rA01 1.10.489.10 Mainly Alpha › Orthogonal Bundle › Chloroperoxidase › Chloroperoxidase-like 0.51 36.0 2.73e-01 81.0% 68.3%
2xzmG00 1.10.455.10 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 0.50 40.0 2.97e-01 93.7% 78.6%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4010813 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.96 80.0 5.59e-01 95.2% 32.4%
4183693 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.91 84.0 5.77e-01 100.0% 32.8%
4016908 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 47.0 3.67e-01 100.0% 62.7%
3805834 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.53 41.0 3.01e-01 90.5% 67.8%
3471554 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 39.0 2.54e-01 84.1% 34.6%
4890527 101.1.16.1 ↗ alpha arrays › HTH › HTH › Ribosomal protein L11, C-terminal domain › Ribosomal_L11 0.52 38.0 4.01e-01 79.4% 89.5%
3742464 109.4.1.441 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TFCD_C 0.51 40.0 2.90e-01 92.1% 67.7%