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HM151342.1__ADK73446.1__RDJLphi1_gp45__00045
Bact-VirHM151342.1__ADK73446.1__RDJLphi1_gp45__00045
Identity
- Accession:
- HM151342 ↗
- Kingdom:
- phage
Quality
93.1
mean pLDDT
Taxonomy
TaxID: 562742
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-63
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dpgA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.63 | 54.0 | 3.45e-01 | 100.0% | 85.8% |
| 3m05B01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 39.0 | 3.45e-01 | 73.7% | 87.0% |
| 5cw3C01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.57 | 45.0 | 3.60e-01 | 100.0% | 66.0% |
| 1pu1A00 | 3.30.300.100 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like | 0.57 | 41.0 | 3.63e-01 | 80.7% | 54.9% |
| 5ib9A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.57 | 47.0 | 3.07e-01 | 98.2% | 48.8% |
| 2avxA00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.56 | 45.0 | 3.35e-01 | 98.2% | 32.2% |
| 1yk9A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.53 | 41.0 | 3.07e-01 | 94.7% | 92.9% |
| 3c19A01 | 3.30.70.1380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transcriptional regulatory protein pf0864 domain like | 0.53 | 45.0 | 3.83e-01 | 98.2% | 73.7% |
| 2ab5B01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.52 | 45.0 | 3.55e-01 | 100.0% | 89.8% |
| 2nugB02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 42.0 | 3.94e-01 | 100.0% | 73.2% |
| 3ihlB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 42.0 | 2.91e-01 | 96.5% | 78.6% |
| 3kulA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 41.0 | 3.61e-01 | 91.2% | 58.4% |
| 1aroP05 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.51 | 38.0 | 2.61e-01 | 80.7% | 32.1% |
| 1nbwA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 42.0 | 3.35e-01 | 98.2% | 61.4% |
| 3wa7A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 41.0 | 2.51e-01 | 100.0% | 71.7% |
| 6et0A02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.50 | 42.0 | 3.19e-01 | 100.0% | 37.1% |
| 3pg4A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.50 | 43.0 | 2.92e-01 | 100.0% | 38.7% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4942818 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.82 | 36.0 | 2.64e-01 | 100.0% | 17.9% |
| 1119296 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.77 | 58.0 | 5.08e-01 | 100.0% | 55.4% |
| 3329729 | 5104.1.1.3 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 | 0.68 | 59.0 | 4.47e-01 | 100.0% | 58.6% |
| 5033074 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.68 | 37.0 | 2.93e-01 | 100.0% | 27.3% |
| 4948264 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.65 | 49.0 | 4.39e-01 | 80.7% | 61.3% |
| 3608304 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 30.0 | 2.39e-01 | 98.2% | 24.5% |
| 3469919 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.60 | 44.0 | 4.07e-01 | 91.2% | 60.0% |
| 5077356 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 36.0 | 2.87e-01 | 100.0% | 27.2% |
| 4028267 | 244.3.1.2 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › SufE | 0.60 | 51.0 | 3.88e-01 | 100.0% | 43.9% |
| 3225873 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.58 | 49.0 | 3.07e-01 | 98.2% | 94.6% |
| 3714160 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.58 | 50.0 | 4.34e-01 | 100.0% | 80.0% |
| 3422343 | 325.1.2.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Molybdopterin synthase subunit MoaE › MoaE | 0.57 | 47.0 | 4.30e-01 | 94.7% | 91.3% |
| 3688597 | 2011.2.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like | 0.57 | 40.0 | 2.87e-01 | 77.2% | 25.0% |
| None | — | 0.56 | 49.0 | 2.75e-01 | 100.0% | 21.5% | |
| 3829017 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.56 | 40.0 | 3.71e-01 | 89.5% | 57.3% |
| 3472642 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.56 | 44.0 | 2.72e-01 | 93.0% | 92.6% |
| 4013407 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.56 | 45.0 | 2.98e-01 | 100.0% | 93.4% |
| 3487368 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.55 | 40.0 | 3.86e-01 | 78.9% | 73.8% |
| 4890002 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.55 | 38.0 | 2.79e-01 | 71.9% | 58.7% |
| 3350168 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.55 | 43.0 | 3.40e-01 | 86.0% | 95.0% |
| 5075417 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.55 | 39.0 | 3.24e-01 | 78.9% | 82.6% |
| 3614205 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 46.0 | 3.56e-01 | 98.2% | 75.0% |
| 3636298 | 5001.1.1.6 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Bac_rhodopsin | 0.54 | 43.0 | 2.89e-01 | 89.5% | 26.7% |
| 3185221 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.54 | 48.0 | 2.84e-01 | 100.0% | 57.2% |
| 4941022 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.53 | 40.0 | 2.72e-01 | 84.2% | 88.4% |
| 3256573 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.52 | 42.0 | 3.16e-01 | 96.5% | 95.2% |
| 5057424 | 177.1.1.0 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease | 0.52 | 42.0 | 2.98e-01 | 100.0% | 65.5% |
| 3479321 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.51 | 39.0 | 2.48e-01 | 87.7% | 77.7% |
| 1167716 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.51 | 43.0 | 2.89e-01 | 100.0% | 34.4% |
| 4033381 | 3218.1.1.1 ↗ | a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain › Terminase_2 | 0.51 | 35.0 | 3.29e-01 | 71.9% | 80.0% |
| 3730099 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.51 | 34.0 | 3.15e-01 | 86.0% | 54.1% |
| 3200646 | 220.1.1.201 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7493 | 0.51 | 40.0 | 3.44e-01 | 94.7% | 92.4% |
| 1834407 | 3218.1.1.1 ↗ | a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain › Terminase_2 | 0.50 | 34.0 | 3.10e-01 | 71.9% | 65.4% |
| 5053278 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.50 | 41.0 | 2.57e-01 | 96.5% | 26.5% |
| 5018565 | 2004.1.1.293 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 | 0.50 | 44.0 | 2.70e-01 | 100.0% | 46.4% |
| 3935690 | 101.1.2.111 ↗ | alpha arrays › HTH › HTH › winged helix domain › RQC | 0.50 | 35.0 | 2.67e-01 | 71.9% | 49.2% |