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HM159959.1__ADL40325.1__phiCTP1_gp24__00024

Bact-Vir

HM159959.1__ADL40325.1__phiCTP1_gp24__00024

Identity

Accession:
HM159959 ↗
Kingdom:
phage

Quality

86.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Clostridium_phage_phiCTP1

TaxID: 871584

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-79
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q2yA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.71 53.0 4.32e-01 94.6% 42.1%
2pdoA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.68 50.0 4.31e-01 94.6% 48.4%
1vybA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.67 45.0 3.19e-01 86.5% 22.0%
4fvmA03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.64 52.0 3.75e-01 93.2% 99.6%
4qclA03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.62 52.0 3.65e-01 100.0% 84.1%
3n7zA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 43.0 3.44e-01 94.6% 35.0%
2p0wA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 52.0 4.40e-01 100.0% 55.6%
3cyjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 50.0 4.24e-01 93.2% 92.6%
4c23B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 52.0 3.67e-01 98.6% 38.0%
2zadA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 49.0 4.30e-01 93.2% 100.0%
1w99A03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.58 46.0 3.55e-01 98.6% 36.7%
7pjjA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 45.0 3.83e-01 86.5% 59.2%
2c9kA03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.58 50.0 3.76e-01 100.0% 53.3%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.57 45.0 3.85e-01 87.8% 64.1%
1j54A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 50.0 3.86e-01 100.0% 99.4%
6bjqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 36.0 3.43e-01 94.6% 53.4%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.57 48.0 4.15e-01 98.6% 84.0%
1vw4F01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.56 50.0 4.62e-01 97.3% 88.2%
1tvgA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 40.0 3.43e-01 97.3% 42.6%
2chrA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 47.0 4.00e-01 94.6% 92.9%
4i3gA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 3.92e-01 90.5% 68.4%
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 44.0 4.15e-01 93.2% 87.1%
1dlcA03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.53 45.0 3.43e-01 100.0% 50.8%
4o5lL02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 3.58e-01 93.2% 57.7%
4bfeA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 35.0 3.43e-01 97.3% 60.5%
3eb7A03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.53 45.0 3.42e-01 100.0% 47.7%
4v0hD00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 43.0 3.17e-01 94.6% 83.0%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 38.0 2.56e-01 81.1% 70.8%
7xoiD01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 45.0 4.02e-01 97.3% 67.3%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 3.66e-01 91.9% 85.5%
3ijlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 44.0 3.85e-01 93.2% 69.4%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 42.0 3.37e-01 93.2% 67.5%
4xurA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 42.0 3.35e-01 94.6% 46.6%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 44.0 3.77e-01 94.6% 97.4%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.51 42.0 3.68e-01 90.5% 88.1%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.51 43.0 3.43e-01 94.6% 60.5%
2ifgA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 33.0 3.21e-01 98.6% 56.7%
4e5xG00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 39.0 3.58e-01 85.1% 93.9%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5018285 213.1.1.25 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.70 57.0 5.01e-01 97.3% 60.0%
3208006 213.1.1.25 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.63 56.0 4.78e-01 100.0% 93.5%
3908446 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.63 42.0 2.96e-01 93.2% 20.4%
3928653 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.61 44.0 3.37e-01 95.9% 31.7%
3506686 2484.1.1.36 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 0.61 54.0 3.87e-01 100.0% 85.9%
4259138 2484.1.1.68 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 0.61 52.0 3.75e-01 100.0% 72.3%
3616237 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.60 44.0 3.19e-01 91.9% 29.2%
3506789 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.60 52.0 4.03e-01 100.0% 90.9%
167858 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.59 50.0 4.28e-01 95.9% 91.2%
3738128 844.1.1.4 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase 0.59 49.0 3.71e-01 94.6% 56.8%
3218625 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.59 42.0 3.12e-01 95.9% 27.8%
3775744 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.58 48.0 4.24e-01 100.0% 76.6%
3738266 2004.1.1.433 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.58 42.0 2.51e-01 77.0% 13.8%
3699292 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.58 42.0 3.18e-01 77.0% 48.1%
3308208 2003.1.2.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N 0.58 46.0 2.92e-01 87.8% 61.2%
5859 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.57 34.0 3.14e-01 71.6% 45.2%
3902712 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.57 44.0 3.34e-01 100.0% 32.2%
3740693 101.1.21.1 ↗ alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.56 46.0 2.66e-01 87.8% 24.1%
5063673 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.56 48.0 4.15e-01 97.3% 96.7%
4945201 218.1.1.11 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_C 0.55 47.0 4.05e-01 94.6% 98.3%
4661040 2492.1.1.6 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › A_deamin 0.55 46.0 3.09e-01 97.3% 47.6%
3599368 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 46.0 3.30e-01 100.0% 74.8%
3178078 220.1.1.70 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_5 0.54 45.0 3.52e-01 91.9% 83.0%
4558682 76.1.1.1 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M 0.54 46.0 3.39e-01 100.0% 34.1%
4314504 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.54 44.0 3.74e-01 94.6% 94.8%
395616 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.54 45.0 3.85e-01 91.9% 92.4%
3788782 2004.1.1.199 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B 0.54 46.0 2.79e-01 97.3% 17.1%
4009644 2008.1.1.160 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27151 0.53 41.0 3.28e-01 89.2% 43.4%
3934401 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 39.0 3.52e-01 93.2% 54.5%
3920715 2004.1.1.674 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21, AAA_23, SbcC_Walker_B 0.53 45.0 2.75e-01 97.3% 17.8%
3462595 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.52 42.0 4.03e-01 100.0% 75.6%
3550551 101.1.21.1 ↗ alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.52 44.0 3.14e-01 100.0% 74.1%
3690788 101.1.21.1 ↗ alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.52 44.0 3.10e-01 100.0% 68.1%
3691415 2004.1.1.748 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15, AAA_23, SbcC_Walker_B 0.51 44.0 2.68e-01 100.0% 15.4%
3183246 4065.1.1.0 ↗ a+b complex topology › L-A virus major coat protein-related › L-A virus major coat protein-related › L-A virus major coat protein-related 0.51 42.0 2.61e-01 97.3% 43.8%
3386302 3186.1.1.1 ↗ a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK › Flg_hook 0.51 38.0 3.64e-01 86.5% 68.2%
4012048 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 42.0 2.80e-01 95.9% 88.2%
3271779 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 41.0 3.36e-01 90.5% 75.2%
3201856 2004.1.1.199 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B 0.51 44.0 2.64e-01 100.0% 15.3%
4595466 3572.1.1.2 ↗ a+b complex topology › Cascade subunit Csa5 › Cascade subunit Csa5 › Cascade subunit Csa5 › Cas_Csa5 0.51 36.0 3.15e-01 78.4% 100.0%
3712649 2004.1.1.199 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B 0.50 41.0 2.55e-01 94.6% 90.3%