←Back to structures

HM246720.1AEF56741.1X__00006

Bact-Vir

HM246720.1__AEF56741.1__X__00006

Identity

Accession:: HM246720 ↗
Kingdom:: phage

Quality

78.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Connertonviridae› Firehammervirus› Campylobacter_phage_vB_CcoM-IBB_35

TaxID: 2920889

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-100

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF25623.2 best	T4_CASP	31.5	1.90e-07	97.9%	34.8%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4iloA00	1.10.287.1490	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.81	60.0	4.40e-01	76.8%	58.5%
4mh6A00	1.10.287.1700	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.78	54.0	4.44e-01	100.0%	42.1%
1xvhB00	1.20.120.1850	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Ebh helix bundles repeating unit (S and A modules)	0.72	54.0	5.01e-01	78.9%	63.6%
5yixA00	1.10.601.10	Mainly Alpha › Orthogonal Bundle › RNA Polymerase Primary Sigma Factor › RNA Polymerase Primary Sigma Factor	0.57	47.0	3.31e-01	91.6%	42.9%
3oduB01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.54	40.0	2.91e-01	80.0%	46.6%
2incA00	1.10.620.20	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A	0.51	38.0	2.46e-01	77.9%	95.5%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3610147	3755.1.1.0 ↗	alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related	0.87	53.0	4.32e-01	93.7%	36.0%
3183024	3755.3.1.46 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › She9_MDM33	0.82	58.0	4.99e-01	72.6%	50.7%
4178099	632.22.1.176 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › PF27734	0.82	58.0	4.79e-01	72.6%	77.4%
3719307	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.79	52.0	4.00e-01	100.0%	32.0%
3579748	3755.4.1.0 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain	0.73	54.0	4.42e-01	76.8%	43.5%
4203130	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.72	53.0	4.95e-01	76.8%	75.7%
4016636	601.19.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein	0.70	53.0	3.86e-01	80.0%	30.8%
3437287	5086.1.1.199 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PF31016	0.69	57.0	4.48e-01	85.3%	49.7%
4483714	632.22.1.62 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › ATG17_like	0.68	60.0	4.25e-01	100.0%	86.6%
3599894	3755.4.1.0 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain	0.68	47.0	3.98e-01	72.6%	51.2%
4968057	632.2.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains	0.67	47.0	5.25e-01	74.7%	93.3%
5069402	632.23.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I	0.67	46.0	5.26e-01	72.6%	98.6%