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HM246723.1__AEF56834.1__X__00005

Bact-Vir

HM246723.1__AEF56834.1__X__00005

Identity

Accession:
HM246723 ↗
Kingdom:
phage

Quality

94.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Connertonviridae› Firehammervirus› Campylobacter_phage_vB_CcoM-IBB_35

TaxID: 2920889

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-75
PDB
Domain cluster: rep: SRR1747018_scaffold_15_prodigal-single.1__X__X__00108__D2-89
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ii7B02 3.30.110.80 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › DNA double-strand break repair nuclease 0.74 51.0 4.98e-01 100.0% 65.1%
1zl0B02 3.50.30.60 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › LD-carboxypeptidase A C-terminal domain-like 0.64 51.0 4.18e-01 100.0% 46.8%
4bxoA01 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 48.0 4.00e-01 100.0% 45.2%
7og5F01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.61 51.0 4.07e-01 100.0% 45.1%
5f4bA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.61 51.0 3.98e-01 97.3% 69.4%
2bmbA02 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.59 50.0 3.35e-01 100.0% 28.0%
4jbgA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 37.0 3.13e-01 100.0% 35.8%
7d73E01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.58 49.0 3.60e-01 98.6% 34.1%
2hwwB00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.57 45.0 3.63e-01 90.5% 89.2%
3g23A02 3.50.30.60 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › LD-carboxypeptidase A C-terminal domain-like 0.56 45.0 4.13e-01 100.0% 64.8%
6znpA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 43.0 3.17e-01 91.9% 29.2%
4xjxA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 46.0 3.55e-01 95.9% 50.3%
3g79A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 49.0 3.53e-01 100.0% 33.5%
2ocdB01 3.40.50.1170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › L-asparaginase, N-terminal domain 0.55 46.0 3.48e-01 100.0% 51.2%
7e0wA01 3.40.525.10 Alpha Beta › 3-Layer(aba) Sandwich › Phosphatidylinositol Transfer Protein Sec14p › CRAL-TRIO lipid binding domain 0.54 46.0 3.76e-01 100.0% 49.0%
1yt8A03 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.54 44.0 4.20e-01 100.0% 75.8%
1h7sA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.54 46.0 3.50e-01 100.0% 81.9%
2mr5A00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 45.0 3.82e-01 100.0% 76.5%
3zdbA01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.53 45.0 3.67e-01 100.0% 85.4%
3d3kA00 3.40.50.10260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › YjeF N-terminal domain 0.52 44.0 3.21e-01 100.0% 44.2%
4n7bA03 3.40.1010.20 Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, catalytic domain 0.52 44.0 4.08e-01 100.0% 75.3%
3e1uA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 42.0 3.33e-01 100.0% 44.6%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5011803 246.2.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases 0.92 82.0 6.02e-01 100.0% 40.0%
3603621 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.91 84.0 6.24e-01 100.0% 42.9%
3588314 246.2.1.9 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.89 83.0 5.91e-01 100.0% 39.7%
5021151 246.2.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases 0.89 80.0 5.92e-01 100.0% 41.1%
4228319 3979.1.1.0 ↗ a+b four layers › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain 0.69 50.0 5.40e-01 100.0% 95.0%
4134599 3979.1.1.0 ↗ a+b four layers › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain 0.62 46.0 4.77e-01 95.9% 85.7%
5077809 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.61 52.0 3.80e-01 100.0% 32.2%
3280461 7516.1.1.23 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › DUF2064 0.61 52.0 3.84e-01 100.0% 34.9%
3325896 7512.1.1.27 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › O-FucT 0.61 53.0 4.37e-01 100.0% 71.4%
None — 0.61 46.0 3.52e-01 100.0% 34.9%
4275981 2495.1.1.1 ↗ a/b three-layered sandwiches › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › MinC_N 0.60 48.0 4.79e-01 98.6% 88.0%
3564980 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.60 53.0 3.51e-01 100.0% 32.1%
4932399 2004.1.1.43 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SRP54 0.59 47.0 3.12e-01 93.2% 24.4%
4024572 7516.1.1.1 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase 0.57 49.0 3.42e-01 100.0% 27.9%
3609496 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.56 48.0 3.94e-01 100.0% 56.7%
3288648 2002.1.1.16 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.56 47.0 3.16e-01 100.0% 21.7%
4945436 2484.1.1.16 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII 0.56 47.0 3.46e-01 97.3% 58.1%
4991375 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 43.0 3.80e-01 100.0% 56.5%
4030424 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.55 46.0 3.37e-01 97.3% 71.6%
5066525 2004.1.1.67 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA 0.54 46.0 3.27e-01 100.0% 72.0%
5015704 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.54 45.0 3.93e-01 97.3% 61.7%
3510563 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 44.0 3.14e-01 97.3% 56.6%
4936095 7550.1.1.1 ↗ a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase 0.51 45.0 3.92e-01 100.0% 72.2%