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HM452125.1__ADM79652.1__phiAS4_ORF0080__00080

Bact-Vir

HM452125.1__ADM79652.1__phiAS4_ORF0080__00080

Identity

Accession:
HM452125 ↗
Kingdom:
phage

Quality

71.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Tulanevirus› Aeromonas_phage_phiAS4

TaxID: 879628

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 30-99
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.70 57.0 4.33e-01 88.6% 39.5%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.53 41.0 3.71e-01 88.6% 63.7%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.53 31.0 2.54e-01 95.7% 29.3%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.51 40.0 3.57e-01 88.6% 61.9%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2101663 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.82 76.0 5.65e-01 100.0% 44.8%
4995819 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.81 74.0 5.70e-01 100.0% 50.0%
3581358 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.78 69.0 5.33e-01 100.0% 45.8%
2101633 1.1.13.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube 0.75 59.0 4.45e-01 100.0% 35.9%
2832217 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.72 61.0 4.85e-01 100.0% 46.5%
3942090 1.1.5.77 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube 0.72 58.0 4.41e-01 88.6% 37.6%
3976188 1.1.13.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube 0.69 54.0 4.15e-01 88.6% 37.0%
3164699 1.1.13.33 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DNA_circ_N 0.67 53.0 4.58e-01 88.6% 63.5%
5082881 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.64 51.0 4.25e-01 87.1% 52.8%
4992378 304.133.1.1 ↗ a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.59 44.0 3.81e-01 87.1% 48.3%
4942627 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.57 41.0 3.28e-01 81.4% 36.7%
3953553 304.133.1.1 ↗ a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.55 42.0 3.73e-01 88.6% 56.2%
3654114 2484.1.1.26 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.53 38.0 2.85e-01 78.6% 45.7%
4943323 304.44.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 0.53 41.0 3.68e-01 88.6% 61.5%
4034209 1.1.13.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.52 43.0 3.67e-01 100.0% 53.0%
5061960 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.52 43.0 2.64e-01 97.1% 58.3%
4487943 304.17.1.1 ↗ a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain › NusG 0.52 37.0 3.15e-01 88.6% 42.3%
4862327 304.44.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.51 40.0 3.78e-01 88.6% 73.9%
4941424 2004.1.1.76 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.51 38.0 2.54e-01 87.1% 82.7%
5050142 304.25.1.0 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.51 41.0 3.36e-01 100.0% 45.7%
3940050 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.51 38.0 2.75e-01 82.9% 50.0%
3796173 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 29.0 2.18e-01 92.9% 22.2%
5052711 304.55.2.0 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like 0.50 39.0 3.32e-01 100.0% 46.4%
2755624 304.44.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.50 39.0 3.14e-01 88.6% 41.3%
3401330 304.44.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.50 39.0 3.38e-01 88.6% 53.3%
D2 medium residues 100-189
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.76 52.0 4.32e-01 71.1% 87.2%
1tr8A01 2.20.70.30 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain 0.74 40.0 5.00e-01 74.4% 90.4%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.74 50.0 4.15e-01 70.0% 44.2%
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.74 52.0 4.24e-01 73.3% 42.6%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.73 50.0 4.10e-01 71.1% 81.2%
3he1A00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.73 51.0 4.24e-01 72.2% 87.1%
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.61 32.0 3.18e-01 71.1% 46.9%
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 38.0 3.36e-01 96.7% 42.4%
2qrdA00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.54 32.0 2.99e-01 73.3% 46.5%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.52 33.0 3.08e-01 94.4% 50.0%
3tthB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 33.0 2.69e-01 71.1% 36.6%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 31.0 3.05e-01 94.4% 53.5%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.50 35.0 3.30e-01 92.2% 57.9%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.50 41.0 3.84e-01 87.8% 76.1%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995819 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.91 61.0 4.98e-01 70.0% 41.3%
2471641 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.87 59.0 4.86e-01 71.1% 42.3%
2832217 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.86 58.0 4.86e-01 71.1% 43.7%
3966479 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.78 55.0 4.44e-01 72.2% 89.7%
3942477 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.78 54.0 4.38e-01 71.1% 84.7%
4929752 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.75 51.0 4.21e-01 70.0% 43.2%
1563850 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.73 50.0 4.10e-01 71.1% 81.2%
3517706 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.53 37.0 2.91e-01 71.1% 45.3%
3382839 7026.1.1.13 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › Hobbit 0.53 39.0 2.35e-01 77.8% 26.6%
3940585 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.52 36.0 2.82e-01 70.0% 44.5%
3217527 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.51 35.0 2.76e-01 71.1% 46.5%
5017777 289.1.1.2 ↗ a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Zn_protease 0.50 35.0 2.97e-01 74.4% 49.4%