←Back to structures
HM452125.1__ADM79705.1__phiAS4_ORF0133__00133
Bact-VirHM452125.1__ADM79705.1__phiAS4_ORF0133__00133
Identity
- Accession:
- HM452125 ↗
- Kingdom:
- phage
Quality
76.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Tulanevirus›
Aeromonas_phage_phiAS4
TaxID: 879628
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-72
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21871.2 best | Gp6_C-III | 116.5 | 5.80e-34 | 100.0% | 93.4% |
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8igrI01 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.69 | 46.0 | 3.42e-01 | 73.2% | 27.8% |
| 5ajiB03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 54.0 | 4.94e-01 | 88.7% | 91.6% |
| 1vbkA01 | 3.30.70.1510 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like | 0.67 | 61.0 | 5.79e-01 | 100.0% | 95.2% |
| 2fgyA01 | 1.20.120.1310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Carboxysome Shell Carbonic Anhydrase, N-terminal helical domain | 0.66 | 45.0 | 3.97e-01 | 78.9% | 47.7% |
| 4q7aC02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 57.0 | 5.03e-01 | 100.0% | 100.0% |
| 3umbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.65 | 51.0 | 4.96e-01 | 87.3% | 100.0% |
| 1te5A00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.65 | 55.0 | 3.84e-01 | 98.6% | 31.2% |
| 2x3mA00 | 1.25.40.670 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.64 | 43.0 | 3.35e-01 | 71.8% | 30.1% |
| 8gk4C02 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.64 | 53.0 | 4.89e-01 | 93.0% | 100.0% |
| 4bkxA01 | 4.10.1240.50 | Few Secondary Structures › Irregular › Hormone receptor fold › | 0.63 | 44.0 | 3.76e-01 | 71.8% | 49.6% |
| 1ks9A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.62 | 44.0 | 3.78e-01 | 77.5% | 58.5% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 49.0 | 4.87e-01 | 90.1% | 100.0% |
| 3juiA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.61 | 47.0 | 3.54e-01 | 83.1% | 74.1% |
| 2rhqB06 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.60 | 47.0 | 4.51e-01 | 87.3% | 100.0% |
| 1b7yB06 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.59 | 46.0 | 4.36e-01 | 85.9% | 98.8% |
| 7y9hB01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.59 | 47.0 | 3.15e-01 | 91.5% | 35.2% |
| 2q2bA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.59 | 44.0 | 3.48e-01 | 78.9% | 86.5% |
| 4iumA00 | 3.90.70.160 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.58 | 48.0 | 4.02e-01 | 93.0% | 100.0% |
| 2qgaB01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.58 | 47.0 | 4.13e-01 | 93.0% | 72.8% |
| 1orsC00 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.57 | 41.0 | 3.43e-01 | 77.5% | 66.7% |
| 1d5tA02 | 3.30.519.10 | Alpha Beta › 2-Layer Sandwich › Guanine Nucleotide Dissociation Inhibitor; domain 2 › Guanine Nucleotide Dissociation Inhibitor, domain 2 | 0.57 | 48.0 | 3.90e-01 | 100.0% | 60.1% |
| 3gzfD00 | 1.10.150.420 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Coronavirus nonstructural protein 4 C-terminus | 0.57 | 44.0 | 4.12e-01 | 84.5% | 94.5% |
| 3bguA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 48.0 | 4.44e-01 | 100.0% | 100.0% |
| 5xzqF00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 47.0 | 4.30e-01 | 100.0% | 97.1% |
| 4oi3A00 | 3.30.70.3090 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ORF SCO4226, nickel-binding ferredoxin-like monomer | 0.55 | 47.0 | 4.55e-01 | 98.6% | 97.5% |
| 2dbbA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.54 | 46.0 | 4.26e-01 | 97.2% | 86.0% |
| 1e6bA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 39.0 | 3.41e-01 | 77.5% | 89.2% |
| 1wibA00 | 3.30.1550.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain | 0.54 | 33.0 | 3.05e-01 | 76.1% | 46.7% |
| 3qpiA00 | 3.30.70.3420 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 46.0 | 3.57e-01 | 100.0% | 57.2% |
| 5k9fA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 45.0 | 4.06e-01 | 100.0% | 94.2% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.52 | 37.0 | 3.69e-01 | 73.2% | 77.3% |
| 2d3o100 | 3.30.70.1050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain | 0.52 | 39.0 | 3.48e-01 | 78.9% | 86.0% |
| 4mtxD00 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.52 | 36.0 | 3.33e-01 | 73.2% | 71.6% |
| 2qyoA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 41.0 | 2.83e-01 | 87.3% | 32.9% |
| 2bghA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.51 | 43.0 | 3.23e-01 | 100.0% | 82.1% |
| 2jaeA03 | 1.20.1440.240 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.51 | 35.0 | 3.17e-01 | 73.2% | 50.5% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1870490 | 3228.1.1.1 ↗ | a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Gp6_C-III | 0.94 | 89.0 | 8.66e-01 | 100.0% | 93.4% |
| 4996140 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.73 | 60.0 | 5.14e-01 | 88.7% | 89.1% |
| 3941701 | 304.28.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran | 0.72 | 65.0 | 5.67e-01 | 100.0% | 92.4% |
| 3294481 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.67 | 54.0 | 3.56e-01 | 93.0% | 30.4% |
| 3362760 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.66 | 53.0 | 3.53e-01 | 88.7% | 91.9% |
| 3478615 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.65 | 47.0 | 3.13e-01 | 76.1% | 37.6% |
| 3905945 | 101.1.2.107 ↗ | alpha arrays › HTH › HTH › winged helix domain › STN1_2 | 0.64 | 46.0 | 4.18e-01 | 77.5% | 90.0% |
| 3829359 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.64 | 48.0 | 4.55e-01 | 81.7% | 98.8% |
| 3816635 | 219.1.1.79 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 | 0.64 | 47.0 | 3.78e-01 | 80.3% | 72.0% |
| 3805545 | 101.1.2.24 ↗ | alpha arrays › HTH › HTH › winged helix domain › MAGE | 0.63 | 50.0 | 4.17e-01 | 88.7% | 77.7% |
| 4961139 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.63 | 49.0 | 4.24e-01 | 88.7% | 87.5% |
| 3446814 | 2003.1.5.30 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7 | 0.61 | 41.0 | 3.09e-01 | 76.1% | 29.4% |
| 5025666 | 7000.1.1.4 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › PF27234 | 0.61 | 45.0 | 3.55e-01 | 80.3% | 46.5% |
| 4956622 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.61 | 52.0 | 4.54e-01 | 100.0% | 96.5% |
| 3599791 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.61 | 45.0 | 2.92e-01 | 83.1% | 23.2% |
| 3724818 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.59 | 44.0 | 3.17e-01 | 83.1% | 69.4% |
| 3808463 | 859.1.1.4 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › ATG13 | 0.58 | 40.0 | 2.82e-01 | 71.8% | 92.5% |
| 4944037 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.57 | 49.0 | 3.93e-01 | 98.6% | 86.0% |
| 3945665 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.57 | 43.0 | 4.33e-01 | 78.9% | 100.0% |
| 3489817 | 5089.1.1.2 ↗ | beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › MACPF | 0.57 | 51.0 | 3.25e-01 | 100.0% | 45.0% |
| 3808190 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.56 | 49.0 | 4.85e-01 | 98.6% | 98.7% |
| 4235667 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.56 | 49.0 | 4.65e-01 | 100.0% | 82.4% |
| 3278878 | 304.18.1.0 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS | 0.56 | 44.0 | 3.91e-01 | 90.1% | 94.5% |
| 4948505 | 865.1.1.1 ↗ | beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › B3_4 | 0.55 | 37.0 | 2.72e-01 | 70.4% | 25.5% |
| 3281659 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.54 | 45.0 | 4.16e-01 | 100.0% | 87.0% |
| 4960489 | 3602.1.1.0 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain | 0.54 | 37.0 | 3.74e-01 | 70.4% | 81.4% |
| 4662935 | 323.1.1.12 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › TRI-like_N | 0.53 | 45.0 | 3.38e-01 | 100.0% | 71.8% |
| 5077552 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.53 | 39.0 | 3.68e-01 | 84.5% | 84.2% |
| 4511876 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.52 | 44.0 | 3.51e-01 | 97.2% | 53.4% |
| 3744287 | 7515.1.1.0 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like | 0.50 | 44.0 | 3.05e-01 | 98.6% | 77.2% |