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HM486077.1__ADX31991.1__X__00077

Bact-Vir

HM486077.1__ADX31991.1__X__00077

Identity

Accession:
HM486077 ↗
Kingdom:
phage

Quality

75.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Tsukamurella_phage_TPA2

TaxID: 981330

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-99
PDB
Domain cluster: rep: NC_011421.1__YP_002300463.1__SPO1_192__00187__D48-133
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 58.0 6.29e-01 100.0% 97.0%
3zleA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.72 32.0 4.25e-01 82.3% 82.1%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 46.0 5.05e-01 89.9% 83.1%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 42.0 3.19e-01 94.9% 26.2%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.66 42.0 4.52e-01 79.7% 76.1%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 45.0 5.00e-01 97.5% 93.3%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 5.14e-01 96.2% 89.9%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 42.0 4.53e-01 98.7% 80.3%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.63 49.0 5.28e-01 98.7% 98.5%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.63 33.0 3.68e-01 84.8% 63.9%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 38.0 4.19e-01 83.5% 80.3%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.60 50.0 4.00e-01 93.7% 75.3%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.59 52.0 4.95e-01 94.9% 90.0%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.48e-01 100.0% 75.0%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 39.0 4.31e-01 83.5% 84.4%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 39.0 4.29e-01 96.2% 98.2%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 48.0 4.47e-01 92.4% 82.2%
4uoiC00 3.30.160.890 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C 0.57 35.0 4.09e-01 70.9% 94.1%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.57 45.0 4.29e-01 98.7% 71.6%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.57 43.0 3.91e-01 79.7% 62.7%
3n8hA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.57 35.0 3.63e-01 88.6% 64.5%
5zg8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 42.0 3.90e-01 79.7% 92.2%
3rn5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 41.0 3.87e-01 75.9% 83.7%
5dvhA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 48.0 3.73e-01 100.0% 95.1%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 39.0 3.97e-01 91.1% 78.7%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 4.45e-01 88.6% 95.8%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 43.0 3.47e-01 92.4% 64.5%
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 33.0 3.83e-01 78.5% 91.1%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 38.0 3.22e-01 88.6% 45.5%
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.52 35.0 2.80e-01 70.9% 56.8%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3386124 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.79 43.0 4.33e-01 82.3% 53.8%
5035671 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.72 44.0 4.01e-01 83.5% 47.6%
5006353 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.71 44.0 3.95e-01 82.3% 46.7%
3434219 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.70 58.0 5.48e-01 98.7% 74.7%
4992039 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.70 39.0 4.00e-01 82.3% 56.8%
3659671 4.25.1.0 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.70 55.0 5.84e-01 97.5% 95.7%
4190130 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.70 41.0 4.00e-01 82.3% 52.2%
3813762 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.69 53.0 5.72e-01 92.4% 100.0%
3508531 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.69 40.0 4.85e-01 87.3% 92.0%
3456496 4.1.1.75 ↗ beta barrels › SH3 › SH3 › SH3 › NdhS 0.68 48.0 4.24e-01 96.2% 51.3%
4177200 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.67 44.0 5.06e-01 92.4% 96.4%
4965423 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.67 44.0 3.74e-01 82.3% 42.4%
4944534 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.67 46.0 3.89e-01 83.5% 43.8%
4963741 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.65 40.0 3.42e-01 82.3% 38.4%
5015458 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.65 41.0 4.17e-01 83.5% 63.7%
5026951 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.64 39.0 3.36e-01 82.3% 38.4%
1567587 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.64 40.0 4.20e-01 81.0% 69.0%
3334322 4.25.1.1 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › Auxin_resp 0.64 55.0 5.68e-01 97.5% 100.0%
3646145 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.64 53.0 3.39e-01 92.4% 23.4%
4010681 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.64 49.0 4.65e-01 98.7% 69.5%
3164388 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.63 41.0 4.50e-01 83.5% 81.5%
1265583 2.4.1.3 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.63 37.0 3.21e-01 82.3% 36.2%
4024274 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.63 51.0 4.73e-01 98.7% 68.6%
4995318 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.63 44.0 3.83e-01 83.5% 48.7%
4953898 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.63 43.0 3.71e-01 83.5% 45.6%
4047622 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.62 41.0 3.70e-01 83.5% 49.1%
3925069 4.1.1.319 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.62 55.0 4.58e-01 100.0% 73.6%
4270910 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 49.0 5.15e-01 98.7% 97.1%
4295399 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.61 55.0 5.08e-01 100.0% 95.0%
3605922 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 50.0 4.63e-01 97.5% 71.0%
5062749 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.60 51.0 4.50e-01 92.4% 79.8%
4969376 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.60 52.0 4.53e-01 94.9% 82.2%
3591693 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.60 54.0 4.55e-01 98.7% 75.4%
3965386 2.4.1.6 ↗ beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.60 44.0 3.83e-01 77.2% 67.8%
3597002 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 49.0 4.41e-01 97.5% 64.5%
3387994 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.60 41.0 4.16e-01 83.5% 71.2%
1260456 283.1.1.3 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase 0.60 40.0 4.02e-01 96.2% 67.1%
4101502 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.59 39.0 4.50e-01 94.9% 100.0%
4168737 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 5.00e-01 100.0% 95.9%
3713571 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 51.0 4.66e-01 96.2% 73.3%
5046464 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.59 44.0 3.83e-01 78.5% 69.6%
3719639 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 53.0 4.53e-01 100.0% 76.8%
4060909 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.58 42.0 3.50e-01 84.8% 43.5%
4961575 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.58 41.0 3.56e-01 75.9% 64.8%
3788921 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.57 47.0 4.37e-01 91.1% 91.0%
3171252 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 41.0 3.09e-01 87.3% 32.4%
5001589 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.56 43.0 4.01e-01 98.7% 66.0%
5032539 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 39.0 4.23e-01 74.7% 100.0%
4051997 2.4.1.3 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.55 40.0 3.53e-01 77.2% 61.7%
3507010 3794.1.2.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.55 40.0 3.67e-01 84.8% 58.1%
3281562 2.4.1.3 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.55 41.0 3.45e-01 78.5% 57.7%
3770803 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.55 49.0 4.41e-01 100.0% 78.2%
3370663 896.1.1.1 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.55 36.0 4.06e-01 81.0% 91.5%
4960051 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.54 43.0 3.41e-01 100.0% 40.2%
4973804 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 39.0 4.04e-01 97.5% 82.7%
4940152 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.51 37.0 3.28e-01 75.9% 58.3%
4085589 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.50 45.0 4.53e-01 98.7% 98.8%