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HM559717.1__AGF91689.1__SVPG_00005__00005
Bact-VirHM559717.1__AGF91689.1__SVPG_00005__00005
Identity
- Accession:
- HM559717 ↗
- Kingdom:
- phage
Quality
89.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Poseidonvirus›
Synechococcus_phage_S-CBP4
TaxID: 754059
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-58
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rfyB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.76 | 64.0 | 5.53e-01 | 91.4% | 68.2% |
| 4nsmA00 | 6.10.250.2770 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.75 | 64.0 | 5.96e-01 | 98.3% | 76.1% |
| 2yevC00 | 6.10.280.110 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 62.0 | 6.04e-01 | 100.0% | 95.2% |
| 3terA00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.67 | 62.0 | 4.80e-01 | 100.0% | 49.6% |
| 2yhsA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.54 | 37.0 | 3.18e-01 | 72.4% | 74.2% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3709712 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.87 | 80.0 | 6.55e-01 | 100.0% | 58.0% |
| 3712975 | 2004.1.1.208 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 | 0.84 | 76.0 | 4.87e-01 | 100.0% | 22.7% |
| 3743804 | 2003.1.5.36 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Gcd10p | 0.81 | 73.0 | 4.74e-01 | 100.0% | 31.3% |
| 3405161 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.81 | 71.0 | 5.30e-01 | 96.6% | 62.3% |
| 3703456 | 192.8.1.231 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Dzip-like_N | 0.76 | 66.0 | 5.13e-01 | 94.8% | 49.2% |
| 3172733 | 630.1.1.4 ↗ | a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › PF28952 | 0.74 | 69.0 | 5.05e-01 | 100.0% | 42.1% |
| 3680001 | 605.1.1.18 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › KIP1 | 0.73 | 67.0 | 5.60e-01 | 100.0% | 72.6% |
| 3362460 | 304.60.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › KIP1 | 0.72 | 67.0 | 6.08e-01 | 100.0% | 90.7% |
| 3367299 | 192.29.1.169 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › KIP1 | 0.72 | 63.0 | 5.31e-01 | 96.6% | 74.7% |
| 3650048 | 109.1.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C | 0.70 | 60.0 | 4.00e-01 | 100.0% | 30.0% |
| 3972594 | 3714.1.1.1 ↗ | a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › LonC_helical | 0.68 | 58.0 | 3.85e-01 | 98.3% | 31.8% |
| 4305708 | 2003.1.15.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Glycosyltransferase Maf N-terminal domain | 0.67 | 53.0 | 3.57e-01 | 87.9% | 23.9% |
| 3600118 | 4044.1.1.0 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins | 0.67 | 59.0 | 5.03e-01 | 100.0% | 62.1% |
| 3788118 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.66 | 52.0 | 4.92e-01 | 86.2% | 75.7% |