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HM596271.1__ADP69193.1__X__00009

Bact-Vir

HM596271.1__ADP69193.1__X__00009

Identity

Accession:
HM596271 ↗
Kingdom:
phage

Quality

76.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 36-89
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o51A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.79 56.0 4.73e-01 75.9% 98.9%
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.73 53.0 4.44e-01 79.6% 60.2%
1eerC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.73 58.0 4.75e-01 87.0% 59.8%
3l5iA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.72 54.0 4.56e-01 79.6% 55.7%
3r8qA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.72 54.0 4.53e-01 79.6% 57.3%
7y8sB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 53.0 4.57e-01 79.6% 59.5%
5eh1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 52.0 4.32e-01 79.6% 55.8%
2f4pA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.70 50.0 3.70e-01 79.6% 30.6%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.69 51.0 4.01e-01 79.6% 44.0%
1ifrA00 2.60.40.1260 Mainly Beta › Sandwich › Immunoglobulin-like › Lamin Tail domain 0.68 51.0 4.04e-01 81.5% 63.7%
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 51.0 4.75e-01 81.5% 85.3%
5d2lE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 50.0 3.97e-01 79.6% 63.0%
6m3yA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 51.0 3.97e-01 81.5% 45.2%
4egjB03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.67 47.0 4.47e-01 77.8% 62.5%
1wgyA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.67 47.0 4.22e-01 77.8% 52.6%
3nd1A02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.67 48.0 3.94e-01 79.6% 50.0%
2mngA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 49.0 3.67e-01 79.6% 33.6%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 49.0 4.36e-01 81.5% 58.2%
4chkB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.66 48.0 4.09e-01 85.2% 47.3%
2w9xB01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.66 45.0 3.70e-01 79.6% 39.0%
3kg0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 49.0 4.07e-01 81.5% 96.9%
6xaxA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 48.0 4.18e-01 79.6% 60.0%
3vx8A01 3.40.140.100 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 C-terminal domain 0.65 58.0 4.26e-01 100.0% 54.6%
1yhpA02 2.60.40.1720 Mainly Beta › Sandwich › Immunoglobulin-like › Calcium-dependent cell adhesion molecule-1 0.65 50.0 3.88e-01 83.3% 44.2%
2npnA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.65 47.0 3.87e-01 79.6% 48.6%
6gszA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 49.0 4.01e-01 81.5% 55.9%
2e8yA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 48.0 4.01e-01 79.6% 52.6%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 46.0 3.95e-01 75.9% 66.3%
1a21B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 48.0 3.99e-01 81.5% 49.0%
4ye4L01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 50.0 3.98e-01 87.0% 61.9%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 4.32e-01 77.8% 77.3%
5owvD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 44.0 2.98e-01 75.9% 19.4%
4dguA01 2.60.40.2680 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 47.0 3.74e-01 81.5% 53.6%
3f95B00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.63 46.0 3.30e-01 81.5% 36.4%
3dh1B00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.63 52.0 3.85e-01 100.0% 83.1%
4b29A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 46.0 3.15e-01 79.6% 30.3%
1tiyA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.62 52.0 3.86e-01 100.0% 57.7%
3ffyA00 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.62 45.0 3.65e-01 79.6% 42.0%
1ef5A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 44.0 3.86e-01 81.5% 48.9%
1pqsA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 43.0 3.94e-01 77.8% 54.5%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.61 42.0 4.08e-01 85.2% 65.6%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 46.0 3.70e-01 83.3% 53.5%
2yrbA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.60 44.0 3.38e-01 81.5% 47.4%
1iyjB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 50.0 3.69e-01 94.4% 38.7%
3glkA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.59 42.0 4.12e-01 75.9% 74.6%
5t17A00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.58 44.0 3.83e-01 83.3% 55.3%
1ty0B01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 45.0 3.45e-01 87.0% 94.7%
3ec8A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 43.0 3.29e-01 83.3% 48.2%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.57 42.0 2.86e-01 79.6% 83.2%
1oeyL00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 41.0 3.55e-01 83.3% 60.2%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.56 36.0 3.57e-01 100.0% 61.4%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 41.0 3.72e-01 83.3% 72.2%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.55 47.0 3.57e-01 98.1% 87.2%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 44.0 3.49e-01 94.4% 89.0%
3prbA01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 40.0 3.31e-01 79.6% 91.4%
3b33A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 41.0 3.37e-01 85.2% 93.6%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3233338 206.1.3.57 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › FAM91_C 0.84 64.0 3.79e-01 81.5% 25.2%
3935683 206.1.3.57 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › FAM91_C 0.80 60.0 3.78e-01 79.6% 35.7%
None 0.80 56.0 3.15e-01 74.1% 8.4%
3921111 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.72 53.0 4.26e-01 79.6% 68.6%
3717753 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.71 49.0 4.18e-01 77.8% 44.4%
4141472 1.1.3.1 beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.70 61.0 4.56e-01 100.0% 62.1%
3415617 379.1.1.1 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 0.70 51.0 5.27e-01 77.8% 84.0%
3890078 4357.1.1.2 beta barrels › WWE domain › WWE domain › WWE domain › WWE_1 0.69 50.0 4.37e-01 79.6% 84.7%
3333626 822.1.1.0 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.69 49.0 4.83e-01 77.8% 70.0%
4015818 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.68 51.0 3.72e-01 79.6% 92.4%
3536857 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.68 51.0 3.63e-01 81.5% 44.2%
3763290 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.67 48.0 3.70e-01 81.5% 32.3%
3880308 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.67 49.0 4.32e-01 79.6% 90.0%
3608445 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.67 49.0 3.56e-01 79.6% 49.3%
3476233 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.67 49.0 4.14e-01 83.3% 60.0%
3225783 217.1.1.1 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.65 48.0 3.22e-01 81.5% 20.0%
3204174 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.65 52.0 3.58e-01 100.0% 24.3%
3943953 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.65 52.0 3.44e-01 96.3% 50.8%
3847628 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.65 48.0 4.09e-01 83.3% 58.9%
3241915 325.1.1.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like 0.65 47.0 2.77e-01 81.5% 9.8%
3970696 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.65 53.0 4.37e-01 100.0% 92.0%
4971063 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.64 44.0 3.60e-01 74.1% 77.1%
3941506 2002.1.1.16 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.64 54.0 3.35e-01 98.1% 60.6%
3258059 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.64 46.0 4.15e-01 77.8% 96.0%
3215621 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.63 45.0 4.48e-01 74.1% 94.5%
3824515 327.11.2.11 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1_3 0.63 49.0 4.04e-01 85.2% 56.0%
3621342 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.63 52.0 4.49e-01 100.0% 89.5%
3743562 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.63 52.0 5.43e-01 100.0% 100.0%
4340143 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.63 47.0 4.54e-01 98.1% 71.0%
3264411 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 44.0 3.92e-01 81.5% 51.2%
4060964 11.2.1.36 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › MAP10_N 0.62 46.0 3.27e-01 79.6% 47.2%
2573463 302.3.1.0 a+b two layers › Reverse ferredoxin › a+b domain in low-molecular-weight S-layer protein › a+b domain in low-molecular-weight S-layer protein 0.62 48.0 4.19e-01 92.6% 53.9%
3242339 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 46.0 3.04e-01 81.5% 24.2%
3500539 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.62 44.0 4.28e-01 75.9% 68.3%
3400250 379.1.1.3 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.61 44.0 4.60e-01 81.5% 86.0%
4014360 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 50.0 5.13e-01 94.4% 100.0%
4981878 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 45.0 4.22e-01 81.5% 80.0%
3738154 3351.1.1.1 a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.60 52.0 4.07e-01 100.0% 64.8%
3636676 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.60 50.0 4.79e-01 98.1% 80.0%
5001166 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.60 49.0 3.86e-01 100.0% 57.0%
4001126 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.60 48.0 4.94e-01 100.0% 98.0%
3351103 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.60 52.0 3.95e-01 100.0% 43.7%
3928609 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.60 44.0 3.48e-01 79.6% 40.0%
4811774 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.60 49.0 5.11e-01 96.3% 100.0%
4027080 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.60 49.0 3.78e-01 96.3% 69.6%
3798336 4357.1.1.0 beta barrels › WWE domain › WWE domain › WWE domain 0.59 43.0 4.03e-01 79.6% 100.0%
3446768 217.1.1.1 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.58 48.0 3.19e-01 94.4% 47.7%
4928538 2003.1.5.42 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.57 40.0 2.75e-01 79.6% 19.2%
3213885 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.57 41.0 3.38e-01 79.6% 61.9%
3164579 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.57 40.0 3.40e-01 79.6% 41.9%
3881492 109.4.1.411 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TTC3_DZIP3_dom 0.56 47.0 3.02e-01 100.0% 22.6%
3974708 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 41.0 3.27e-01 81.5% 40.8%
4018289 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 41.0 3.03e-01 79.6% 44.1%
3672534 11.1.1.855 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26102 0.54 40.0 3.00e-01 83.3% 36.9%
3926581 864.1.1.0 a+b two layers › DLC › DLC › DLC 0.54 40.0 3.26e-01 81.5% 53.3%
3616430 864.1.1.0 a+b two layers › DLC › DLC › DLC 0.53 41.0 3.19e-01 83.3% 52.5%
3644858 10.32.1.38 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Malectin_like 0.53 37.0 2.78e-01 81.5% 54.9%
None 0.52 45.0 3.11e-01 100.0% 58.4%
4012054 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 35.0 2.80e-01 79.6% 58.6%