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HM596271.1__ADP69204.1__X__00020

Bact-Vir

HM596271.1__ADP69204.1__X__00020

Identity

Accession:
HM596271 ↗
Kingdom:
phage

Quality

68.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Seongbukvirus› Leuconostoc_phage_phiMH1

TaxID: 912321

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-100
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 37.0 4.32e-01 87.0% 79.7%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.64 34.0 4.42e-01 98.9% 97.9%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.62 35.0 4.35e-01 91.3% 96.1%
7tzoA01 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.62 40.0 3.21e-01 91.3% 34.5%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 37.0 4.14e-01 96.7% 78.6%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.61 35.0 4.05e-01 91.3% 79.7%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.61 40.0 4.57e-01 100.0% 96.8%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.60 35.0 4.12e-01 93.5% 91.1%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.60 33.0 3.99e-01 91.3% 85.7%
3ec7A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.60 40.0 3.63e-01 90.2% 50.8%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 38.0 4.40e-01 76.1% 96.7%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.60 33.0 4.06e-01 90.2% 94.2%
3rheA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 30.0 2.79e-01 85.9% 36.8%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 36.0 4.00e-01 100.0% 78.9%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.59 35.0 4.11e-01 92.4% 89.8%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 34.0 3.89e-01 89.1% 77.6%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 36.0 4.16e-01 89.1% 86.4%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 34.0 3.84e-01 93.5% 76.1%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 35.0 4.04e-01 100.0% 88.7%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 32.0 3.60e-01 85.9% 71.6%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 36.0 3.89e-01 100.0% 77.8%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.57 37.0 4.03e-01 100.0% 79.2%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 35.0 4.00e-01 88.0% 83.6%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 33.0 3.76e-01 100.0% 78.8%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 35.0 3.89e-01 85.9% 82.6%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 45.0 4.31e-01 88.0% 95.4%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 44.0 2.89e-01 85.9% 91.0%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 36.0 4.07e-01 100.0% 92.4%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 35.0 3.98e-01 92.4% 90.6%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 34.0 3.90e-01 98.9% 90.3%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 35.0 4.03e-01 96.7% 98.3%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 37.0 4.27e-01 100.0% 98.5%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 33.0 3.83e-01 96.7% 93.2%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 41.0 3.44e-01 97.8% 46.4%
4ak1A02 2.30.30.1270 Mainly Beta › Roll › SH3 type barrels. › 0.53 30.0 3.51e-01 85.9% 81.2%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 31.0 3.68e-01 96.7% 100.0%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 45.0 2.97e-01 97.8% 82.2%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 34.0 3.82e-01 97.8% 94.0%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 35.0 3.94e-01 100.0% 100.0%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5052256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 47.0 4.74e-01 70.7% 91.6%
4034031 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.68 45.0 5.26e-01 100.0% 96.9%
4505316 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 40.0 4.80e-01 100.0% 95.0%
3687350 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 36.0 4.35e-01 96.7% 92.7%
3591224 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 35.0 4.35e-01 95.7% 100.0%
3741680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 36.0 4.38e-01 96.7% 96.4%
4982354 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.61 40.0 4.58e-01 100.0% 95.4%
2897014 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.61 34.0 3.99e-01 91.3% 81.7%
5022848 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 37.0 4.27e-01 98.9% 91.7%
4025829 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 35.0 4.22e-01 98.9% 96.4%
3264879 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 35.0 3.87e-01 98.9% 74.3%
4241924 4.1.1.93 ↗ beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.60 36.0 3.65e-01 100.0% 60.0%
3660358 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 34.0 4.02e-01 100.0% 85.0%
5056181 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.59 32.0 3.93e-01 90.2% 87.3%
5026824 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 36.0 3.98e-01 100.0% 78.6%
4271974 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.58 36.0 4.10e-01 100.0% 87.5%
5031165 4.1.1.93 ↗ beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.58 37.0 4.12e-01 100.0% 84.3%
4629735 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 36.0 4.07e-01 100.0% 86.2%
4888987 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.58 36.0 3.99e-01 100.0% 81.2%
4407054 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.58 33.0 3.88e-01 91.3% 85.0%
5053225 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 44.0 4.30e-01 100.0% 74.0%
4208181 4.1.1.70 ↗ beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.58 39.0 4.42e-01 100.0% 98.5%
3991073 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 33.0 4.01e-01 71.7% 94.5%
5075469 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.57 36.0 4.03e-01 100.0% 87.7%
5013328 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.57 34.0 3.93e-01 92.4% 88.3%
3886492 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.56 38.0 4.07e-01 97.8% 84.0%
3372822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 36.0 3.95e-01 100.0% 81.3%
598 4.1.1.68 ↗ beta barrels › SH3 › SH3 › SH3 › YorP 0.55 35.0 3.79e-01 100.0% 80.3%
3598284 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 31.0 3.63e-01 100.0% 87.3%
3917372 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.55 33.0 3.55e-01 98.9% 72.0%
2727964 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.54 33.0 3.93e-01 96.7% 94.9%
3991065 4.1.1.334 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.54 42.0 4.50e-01 98.9% 96.2%
4207556 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.54 39.0 4.36e-01 95.7% 100.0%
3500084 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 38.0 4.33e-01 98.9% 98.6%
3680814 5.1.4.15 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RPE65 0.53 46.0 3.04e-01 93.5% 46.3%
4132516 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.53 35.0 3.72e-01 100.0% 78.8%
3411858 4.1.1.456 ↗ beta barrels › SH3 › SH3 › SH3 › BAH, BAHCC1-like_Tudor, SH3_TNRC18 0.52 44.0 2.79e-01 89.1% 22.6%
3690650 298.1.1.8 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C 0.52 34.0 3.01e-01 87.0% 44.4%
3995431 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.52 39.0 4.29e-01 100.0% 96.0%
5043533 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 34.0 3.91e-01 100.0% 96.9%
3487081 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 37.0 3.69e-01 98.9% 70.0%
3622714 5.1.5.113 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_WDR19_1st 0.52 44.0 2.96e-01 92.4% 32.9%
4093354 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 36.0 4.02e-01 100.0% 97.1%
3521739 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.52 34.0 3.55e-01 100.0% 72.9%
3651990 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 30.0 3.51e-01 90.2% 87.9%
3767975 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.51 42.0 3.94e-01 100.0% 73.6%
424192 2003.1.2.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lys_Orn_oxgnase 0.51 45.0 3.72e-01 97.8% 95.1%
3790904 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.51 32.0 3.74e-01 81.5% 98.3%
4238063 5.1.4.15 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RPE65 0.50 43.0 2.90e-01 94.6% 44.0%