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HM596271.1__ADP69205.1__X__00021

Bact-Vir

HM596271.1__ADP69205.1__X__00021

Identity

Accession:
HM596271 ↗
Kingdom:
phage

Quality

85.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Seongbukvirus› Leuconostoc_phage_phiMH1

TaxID: 912321

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 41-117
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kvcA01 1.10.150.430 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF3349, helical bundle 0.60 40.0 3.89e-01 80.5% 60.2%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.54 32.0 3.14e-01 94.8% 52.3%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 4.09e-01 93.5% 94.0%
2ffjA01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.52 32.0 3.59e-01 80.5% 83.9%
4mloA03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.50 35.0 3.79e-01 80.5% 91.8%
1dj2A02 1.10.300.10 Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 0.50 40.0 3.72e-01 89.6% 93.9%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3892513 110.1.1.2 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD 0.53 37.0 3.46e-01 72.7% 94.7%
3962431 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.52 40.0 4.13e-01 89.6% 86.7%
3967618 604.5.1.33 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › FUSC 0.51 38.0 2.99e-01 84.4% 81.6%
3521686 110.1.1.2 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD 0.50 34.0 3.29e-01 74.0% 60.0%
D2 high residues 121-161_163-177
PDB
Domain cluster: rep: OP172841.1__WAX18225.1__WC29P3_00046__00046__D164-219
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.74 51.0 5.78e-01 73.2% 95.1%
2p39A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.68 59.0 4.43e-01 100.0% 90.1%
2fdbN00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 50.0 3.71e-01 92.9% 57.4%
3e8lC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 45.0 3.28e-01 85.7% 62.5%
3ne5B01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.57 44.0 3.94e-01 89.3% 76.7%
2orzA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 46.0 3.43e-01 100.0% 57.1%
3bn6A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 45.0 3.39e-01 100.0% 35.4%
5y4mA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 43.0 3.27e-01 100.0% 36.7%
5ek8A01 2.60.40.3330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.29e-01 100.0% 40.5%
6g1nD01 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 42.0 3.87e-01 100.0% 96.4%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.51 40.0 3.80e-01 92.9% 95.7%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 37.0 3.40e-01 100.0% 60.3%
2awnC02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.50 36.0 3.30e-01 100.0% 56.4%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4775977 6.1.1.1 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › FGF 0.74 50.0 5.61e-01 73.2% 90.7%
3486137 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.71 62.0 4.46e-01 100.0% 95.2%
3590224 11.1.4.36 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SpaA 0.68 58.0 4.47e-01 100.0% 56.3%
5003208 5069.1.1.15 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm 0.60 47.0 2.92e-01 87.5% 51.0%
5054507 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 43.0 3.91e-01 87.5% 82.7%
331673 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.54 46.0 3.39e-01 100.0% 55.9%
3487208 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 45.0 3.37e-01 100.0% 36.7%
3962048 227.1.1.15 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PF26035 0.52 39.0 3.31e-01 83.9% 71.0%
3226306 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 45.0 3.54e-01 96.4% 47.0%
4512566 2.1.1.60 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.51 35.0 3.79e-01 100.0% 91.1%
1524863 2.4.1.7 ↗ beta barrels › OB-fold › MOP-like › MOP-like › OB_MalK 0.50 36.0 3.22e-01 100.0% 51.2%