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HM596271.1__ADP69233.1__X__00049

Bact-Vir

HM596271.1__ADP69233.1__X__00049

Identity

Accession:
HM596271 ↗
Kingdom:
phage

Quality

95.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Seongbukvirus› Leuconostoc_phage_phiMH1

TaxID: 912321

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-56
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.70 59.0 4.47e-01 100.0% 38.7%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 41.0 4.22e-01 89.1% 72.5%
6ro0D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 43.0 3.47e-01 76.4% 97.3%
6rupA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 48.0 3.94e-01 92.7% 93.7%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 48.0 4.00e-01 92.7% 98.1%
2wkcB00 2.40.50.400 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein 0.60 47.0 4.07e-01 89.1% 95.5%
4e2xA01 6.20.50.110 Special › Other non-globular › N-terminal domain of TfIIb › Methyltransferase, zinc-binding domain 0.58 43.0 4.38e-01 81.8% 92.5%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 44.0 3.63e-01 92.7% 86.5%
2bmoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 45.0 3.21e-01 96.4% 80.9%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 46.0 3.69e-01 96.4% 68.1%
2wzpR01 2.30.300.20 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Phage tail base-plate attachment protein, domain D1/D2 0.55 38.0 2.75e-01 98.2% 21.4%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 42.0 3.49e-01 92.7% 90.9%
5amhA00 2.170.150.20 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. 0.52 42.0 3.43e-01 90.9% 74.5%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 43.0 3.68e-01 98.2% 68.8%
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.51 34.0 3.14e-01 70.9% 79.5%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.51 32.0 3.39e-01 89.1% 76.1%
4m4xA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 38.0 3.14e-01 90.9% 53.2%
3hi2B00 3.30.2310.40 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › 0.50 41.0 3.49e-01 94.5% 70.1%
1wzvA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.50 43.0 3.21e-01 100.0% 93.3%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3267804 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 57.0 4.69e-01 94.5% 61.0%
3999675 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.62 52.0 4.25e-01 98.2% 84.5%
3215667 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.60 49.0 3.92e-01 96.4% 88.3%
4156749 3234.1.1.2 ↗ a+b two layers › GerBC protein › GerBC protein › GerBC protein › Spore_GerAC, Spore_GerAC_N 0.60 51.0 3.27e-01 100.0% 43.5%
3839607 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.59 46.0 3.79e-01 94.5% 89.0%
3995685 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.58 47.0 3.90e-01 94.5% 94.5%
3274927 2003.1.5.26 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_28 0.57 48.0 2.97e-01 100.0% 60.3%
3717097 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 45.0 2.61e-01 89.1% 12.5%
2035523 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.56 44.0 3.67e-01 94.5% 92.0%
3301326 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.55 44.0 3.11e-01 94.5% 32.8%
3942344 2485.3.1.19 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › PF30928 0.54 43.0 2.86e-01 100.0% 89.4%
3810053 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.54 43.0 3.28e-01 94.5% 82.6%
3182983 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.53 45.0 2.73e-01 98.2% 56.6%
3181439 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 43.0 3.58e-01 98.2% 59.3%
3476563 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 39.0 3.27e-01 90.9% 43.3%
3257650 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 34.0 3.07e-01 92.7% 43.5%
3174953 69.1.1.2 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint 0.51 39.0 2.80e-01 96.4% 92.6%
3786082 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.51 35.0 2.22e-01 72.7% 84.2%
4409019 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.50 37.0 3.36e-01 89.1% 56.2%
D2 high residues 62-161
PDB
Domain cluster: rep: MH707434.1__AYJ75622.1__BSP19_060__00060__D144-264