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HM625712.1__ADP09646.1__X__00001

Bact-Vir

HM625712.1__ADP09646.1__X__00001

Identity

Accession:
HM625712 ↗
Kingdom:
phage

Quality

88.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Tequatrovirus› Enterobacteria_phage_nvv1

TaxID: 909304

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 52-131
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rtsA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.76 49.0 5.17e-01 87.5% 72.6%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 36.0 3.82e-01 73.8% 58.0%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 35.0 4.04e-01 73.8% 70.2%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 37.0 4.28e-01 77.5% 77.2%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 31.0 3.37e-01 71.2% 62.1%
2in3A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 36.0 3.59e-01 90.0% 64.2%
1vhkA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.55 41.0 4.33e-01 78.8% 94.5%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 28.0 3.32e-01 80.0% 71.7%
3varA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 42.0 2.91e-01 90.0% 53.0%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 38.0 3.43e-01 78.8% 90.4%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 37.0 3.42e-01 73.8% 82.8%
3pz6D00 3.90.740.10 Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.50 40.0 2.93e-01 91.3% 62.6%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3032323 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.92 88.0 7.48e-01 100.0% 75.4%
4110715 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.82 55.0 6.30e-01 93.8% 93.2%
3873763 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.74 36.0 4.80e-01 76.2% 92.5%
4123857 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.71 35.0 4.64e-01 76.2% 92.5%
4951165 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.71 37.0 4.38e-01 73.8% 74.5%
4981303 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.69 37.0 4.42e-01 77.5% 78.2%
119323 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.68 38.0 4.38e-01 77.5% 75.9%
5033424 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.67 37.0 4.26e-01 77.5% 73.3%
167222 391.1.1.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.64 35.0 3.93e-01 77.5% 68.9%
3718008 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 34.0 4.02e-01 73.8% 82.0%
4504459 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.55 42.0 4.40e-01 82.5% 96.0%
3280223 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.54 38.0 2.86e-01 72.5% 40.0%
4855185 325.1.7.1 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Biotin_lipoyl 0.52 34.0 3.50e-01 70.0% 70.5%
3474794 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 34.0 3.89e-01 98.8% 93.3%
3789548 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 44.0 2.98e-01 98.8% 72.3%
D2 medium residues 1-26_168-232
PDB
Domain cluster: rep: IMGVR_UViG_3300007985_000017-3300007985-Ga0100381_100027528__D30-62_212-265
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF07068.18 best Gp23 79.0 6.90e-22 71.4% 16.0%
PF07068.18 Gp23 33.9 3.40e-08 29.7% 6.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3195074 2004.1.1.272 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA12 0.59 42.0 2.96e-01 74.7% 38.4%
3693018 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.57 41.0 3.43e-01 74.7% 84.0%
4574043 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.52 43.0 2.78e-01 89.0% 48.3%
D3 medium residues 27-51_132-167
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5xd7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 34.0 2.66e-01 95.1% 26.8%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.52 30.0 2.36e-01 90.2% 27.1%
5lf5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.45e-01 91.8% 62.1%