←Back to structures

HM640230.1__ADR30492.1__X__00019

Bact-Vir

HM640230.1__ADR30492.1__X__00019

Identity

Accession:
HM640230 ↗
Kingdom:
phage

Quality

69.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Guelinviridae› Capvunavirus› Clostridium_phage_CpV1

TaxID: 926066

Cluster

View cluster (25 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-72
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wgfA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.62 44.0 4.76e-01 93.8% 94.3%
4lqkA00 1.10.437.20 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus 0.61 51.0 4.15e-01 96.9% 86.4%
6zhiB02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.59 47.0 4.38e-01 89.2% 85.5%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.59 37.0 3.51e-01 98.5% 53.2%
1aipH03 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.58 38.0 4.20e-01 72.3% 84.6%
2dbhA01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.58 49.0 4.67e-01 100.0% 88.6%
4nv0A02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.57 47.0 4.44e-01 98.5% 87.8%
2bduA02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.56 46.0 4.46e-01 95.4% 95.9%
2vixA02 1.10.150.630 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.55 37.0 3.44e-01 70.8% 93.3%
1au7A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 44.0 4.35e-01 96.9% 83.3%
2jp7A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.54 38.0 3.96e-01 83.1% 86.0%
3kjxD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 40.0 4.16e-01 80.0% 91.8%
3t46A00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.54 41.0 3.95e-01 84.6% 78.7%
4hteA03 1.10.167.30 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › 0.53 35.0 3.38e-01 70.8% 56.2%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.53 36.0 3.32e-01 100.0% 56.1%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3794203 101.11.1.0 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.65 46.0 4.26e-01 75.4% 69.4%
3557417 110.1.1.7 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD_2 0.65 52.0 4.61e-01 93.8% 60.0%
4026047 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.63 43.0 4.01e-01 72.3% 97.6%
3659143 564.1.1.0 ↗ alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors 0.63 47.0 4.13e-01 81.5% 75.0%
3209407 108.1.1.116 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › SAGA-Tad1 0.62 49.0 4.97e-01 87.7% 100.0%
3719948 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.62 36.0 3.69e-01 86.2% 58.5%
3663702 143.1.1.5 ↗ alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain › VIN3_C 0.60 43.0 4.21e-01 75.4% 90.0%
4301877 592.1.1.1 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.60 50.0 4.57e-01 89.2% 85.5%
3651135 3788.1.1.20 ↗ alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › VIN3_C 0.59 43.0 4.12e-01 76.9% 85.3%
3497560 614.1.1.1 ↗ alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › L27 0.59 41.0 3.92e-01 75.4% 87.5%
3353641 3361.1.1.3 ↗ alpha bundles › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › VIN3_C 0.58 42.0 4.09e-01 75.4% 87.1%
4034213 632.2.1.5 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1542 0.57 40.0 3.85e-01 78.5% 86.3%
4143568 192.7.1.3 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N 0.56 38.0 3.46e-01 70.8% 70.0%
5017062 7094.1.1.4 ↗ alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › PF27273 0.55 39.0 3.77e-01 89.2% 65.3%
3282529 632.1.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid 0.54 44.0 3.95e-01 100.0% 91.4%
D2 medium residues 132-206
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25622.2 best Phi29_MCP 50.6 2.80e-13 100.0% 22.0%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r40D00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.70 55.0 3.87e-01 84.0% 68.7%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3423836 316.1.1.30 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PAP_NTPase 0.57 43.0 3.05e-01 78.7% 70.2%
D3 medium residues 222-255_271-317
PDB