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HM770079.1__ADQ92378.1__ELphiS00003c__00003

Bact-Vir

HM770079.1__ADQ92378.1__ELphiS00003c__00003

Identity

Accession:
HM770079 ↗
Kingdom:
phage

Quality

94.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Felsduovirus› Salmonella_phage_RE2010

TaxID: 929814

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-72
PDB
Domain cluster: rep: CP025712.1__AUO37543.1__YDC107_5426__00066__D2-87
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF16452.11 best Phage_CI_C 83.0 2.10e-23 95.8% 65.3%
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.91 84.0 7.05e-01 100.0% 61.9%
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.83 75.0 6.26e-01 100.0% 70.6%
1ay9A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.80 73.0 6.32e-01 100.0% 77.8%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 53.0 5.76e-01 70.4% 100.0%
1jheA00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.77 69.0 5.75e-01 100.0% 69.4%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.76 52.0 5.52e-01 70.4% 96.7%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.74 51.0 5.23e-01 73.2% 87.0%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 48.0 5.01e-01 71.8% 90.9%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.70 59.0 4.94e-01 95.8% 81.6%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 48.0 4.87e-01 71.8% 76.8%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 47.0 5.15e-01 70.4% 96.4%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.69 50.0 4.82e-01 76.1% 100.0%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 48.0 4.38e-01 73.2% 82.3%
4k8wA00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.68 55.0 4.64e-01 87.3% 93.2%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.68 59.0 4.90e-01 98.6% 68.7%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 48.0 3.87e-01 74.6% 63.8%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 46.0 4.94e-01 71.8% 96.7%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.67 49.0 4.47e-01 80.3% 71.6%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.67 43.0 4.98e-01 76.1% 97.9%
2gfuA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 49.0 4.05e-01 80.3% 71.6%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.66 47.0 4.11e-01 76.1% 62.4%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.66 48.0 4.36e-01 78.9% 65.3%
1okeB02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.65 46.0 4.47e-01 73.2% 75.3%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 47.0 5.05e-01 76.1% 98.3%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.64 41.0 4.82e-01 71.8% 100.0%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.64 45.0 5.04e-01 80.3% 100.0%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.64 45.0 4.30e-01 73.2% 91.5%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 52.0 3.37e-01 90.1% 93.7%
1vjvA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 52.0 3.42e-01 90.1% 96.0%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 48.0 5.08e-01 93.0% 92.2%
4fk5A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 50.0 3.30e-01 88.7% 92.8%
1wb1A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 43.0 3.64e-01 73.2% 63.2%
5h9kA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 43.0 3.40e-01 76.1% 85.1%
4m0wA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.60 44.0 3.57e-01 78.9% 70.8%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.60 44.0 3.83e-01 78.9% 100.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 51.0 5.09e-01 97.2% 100.0%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 48.0 4.90e-01 88.7% 97.1%
8bs9A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 47.0 3.14e-01 90.1% 95.7%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 44.0 4.56e-01 83.1% 89.2%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 42.0 3.86e-01 77.5% 63.0%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.57 39.0 3.39e-01 70.4% 97.3%
3mcaA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 39.0 3.53e-01 71.8% 71.6%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.57 37.0 2.78e-01 95.8% 26.1%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 42.0 3.71e-01 78.9% 65.0%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 40.0 3.67e-01 74.6% 68.1%
3e8lC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 41.0 3.18e-01 83.1% 98.3%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.54 37.0 3.41e-01 71.8% 98.9%
5gmkn00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 2.98e-01 98.6% 86.6%
ECOD (78)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942297 4.11.1.3 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.98 95.0 7.80e-01 100.0% 62.8%
4525683 4.11.1.3 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.93 88.0 7.24e-01 100.0% 60.2%
2772566 4.11.1.3 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.92 86.0 7.14e-01 100.0% 61.4%
3963760 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.88 82.0 6.34e-01 100.0% 61.5%
3963450 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.88 81.0 6.44e-01 100.0% 65.2%
3965029 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.87 81.0 6.31e-01 100.0% 61.4%
3964944 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.86 79.0 6.20e-01 100.0% 64.3%
3945057 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.81 74.0 6.06e-01 100.0% 66.4%
4342488 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 59.0 6.27e-01 78.9% 100.0%
4447540 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.79 72.0 5.64e-01 100.0% 58.6%
4957350 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 54.0 5.62e-01 70.4% 84.6%
4031578 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 52.0 6.00e-01 71.8% 96.0%
4607208 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.78 70.0 5.84e-01 100.0% 66.7%
4584943 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.78 60.0 6.08e-01 81.7% 98.6%
3675341 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.78 55.0 6.11e-01 73.2% 94.5%
4505797 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.78 56.0 5.82e-01 76.1% 100.0%
3974846 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.78 70.0 6.05e-01 100.0% 79.1%
4305196 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.77 52.0 6.01e-01 74.6% 100.0%
4640515 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.76 52.0 5.96e-01 73.2% 100.0%
4585317 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.76 53.0 5.87e-01 71.8% 92.7%
4151014 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.76 54.0 5.79e-01 74.6% 100.0%
5034040 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 53.0 5.82e-01 73.2% 100.0%
3290509 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.76 68.0 6.32e-01 100.0% 93.3%
5001903 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 52.0 5.25e-01 71.8% 85.7%
3436022 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.75 55.0 6.13e-01 77.5% 100.0%
4280256 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.74 50.0 5.70e-01 70.4% 98.0%
4342110 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 57.0 5.72e-01 84.5% 97.3%
3933788 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 50.0 5.37e-01 70.4% 98.3%
3586487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 51.0 4.79e-01 71.8% 64.7%
3305577 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.73 52.0 5.78e-01 74.6% 98.2%
4261492 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.73 61.0 4.95e-01 93.0% 84.4%
4945344 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 60.0 3.86e-01 91.5% 89.2%
3996278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 51.0 4.28e-01 73.2% 60.0%
4953054 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 50.0 4.98e-01 73.2% 81.3%
3517651 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 51.0 5.07e-01 74.6% 85.3%
5004476 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 51.0 5.33e-01 76.1% 89.2%
5064457 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.72 48.0 4.91e-01 70.4% 71.4%
4985969 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 48.0 5.15e-01 70.4% 91.7%
4660084 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 54.0 5.52e-01 83.1% 100.0%
4009281 219.1.1.65 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.71 61.0 5.37e-01 95.8% 97.1%
3261395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 49.0 5.26e-01 71.8% 91.4%
4029082 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 48.0 5.37e-01 70.4% 100.0%
4527355 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 53.0 5.37e-01 81.7% 100.0%
4191690 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.70 50.0 5.47e-01 76.1% 98.3%
4963446 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 49.0 5.07e-01 73.2% 89.2%
3928711 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 49.0 4.70e-01 74.6% 97.6%
4359892 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.70 49.0 4.76e-01 74.6% 77.5%
224033 219.1.1.65 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.70 59.0 5.06e-01 95.8% 87.9%
3613878 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.69 58.0 3.93e-01 91.5% 96.1%
4149821 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 50.0 5.29e-01 76.1% 96.7%
3036710 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 49.0 5.12e-01 74.6% 96.8%
5036621 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 47.0 5.13e-01 71.8% 96.4%
4654204 4.1.1.52 ↗ beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.69 47.0 4.40e-01 71.8% 76.4%
3451171 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 50.0 5.18e-01 77.5% 100.0%
4476045 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 52.0 5.23e-01 83.1% 100.0%
4118226 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 52.0 5.25e-01 84.5% 100.0%
4954284 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 48.0 5.08e-01 74.6% 90.0%
4069793 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 50.0 5.08e-01 81.7% 100.0%
5057445 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.67 48.0 4.63e-01 77.5% 70.6%
4941512 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 48.0 4.88e-01 76.1% 85.7%
4975764 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.67 48.0 4.91e-01 77.5% 87.1%
4973749 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 49.0 5.00e-01 78.9% 97.1%
139950 4.1.1.126 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5608 0.66 45.0 4.88e-01 73.2% 98.2%
3389169 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 55.0 5.21e-01 94.4% 96.5%
3617111 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 55.0 5.10e-01 95.8% 92.2%
3782293 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.65 46.0 5.02e-01 77.5% 96.4%
3852545 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 45.0 4.82e-01 77.5% 100.0%
3648296 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.61 49.0 3.24e-01 90.1% 88.8%
3236014 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.61 49.0 3.21e-01 88.7% 95.7%
3508437 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.61 49.0 3.19e-01 90.1% 84.8%
3470550 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.61 49.0 3.25e-01 90.1% 87.2%
3584224 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 50.0 4.50e-01 95.8% 73.3%
3222051 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 48.0 5.03e-01 90.1% 96.9%
3311685 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 46.0 3.34e-01 87.3% 82.9%
4945827 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.58 42.0 3.95e-01 78.9% 68.9%
3602123 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.57 40.0 3.92e-01 73.2% 69.2%
5063794 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.57 41.0 3.96e-01 76.1% 67.5%
3614740 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.55 41.0 3.39e-01 80.3% 83.8%