←Back to structures

HM997019.1__AEK81941.1__X__00026

Bact-Vir

HM997019.1__AEK81941.1__X__00026

Identity

Accession:
HM997019 ↗
Kingdom:
phage

Quality

64.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Grimontviridae› Moazamivirus› Salmonella_phage_7-11

TaxID: 1054968

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 149-279
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00086__D1-125
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3b82B00 3.90.175.10 Alpha Beta › Alpha-Beta Complex › Diphtheria Toxin; domain 1 › Diphtheria Toxin, domain 1 0.71 64.0 5.45e-01 96.2% 67.1%
3oi8A01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.65 30.0 3.55e-01 71.8% 60.4%
2a6qA01 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.61 23.0 3.56e-01 90.8% 95.3%
2j9lF01 3.90.1280.20 Alpha Beta › Alpha-Beta Complex › CBS domain Like › 0.57 29.0 3.63e-01 71.0% 83.6%
3pfyA01 3.30.200.90 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.54 25.0 3.26e-01 73.3% 78.9%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3727394 237.1.1.1 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.72 67.0 5.32e-01 99.2% 66.4%
3711853 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.71 59.0 5.17e-01 98.5% 61.1%
3324343 237.1.1.1 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.68 61.0 5.34e-01 97.7% 65.8%
5064069 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.66 31.0 3.87e-01 94.7% 71.2%
3597511 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.65 59.0 5.13e-01 97.7% 68.2%
5072012 2008.1.1.3 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.64 31.0 3.61e-01 93.9% 63.3%
4973015 5104.1.1.0 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.51 30.0 3.15e-01 100.0% 60.8%
4994421 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.50 36.0 3.55e-01 72.5% 87.1%
D2 high residues 332-413
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2raeA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.72 47.0 3.96e-01 76.8% 40.1%
1yz6A02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.69 55.0 5.42e-01 85.4% 85.1%
2ahoB02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.65 52.0 5.09e-01 86.6% 82.4%
2a6hF01 1.20.120.1810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.65 58.0 4.49e-01 100.0% 67.2%
2a19A02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.63 51.0 5.11e-01 87.8% 89.4%
3t0yA01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.63 46.0 4.94e-01 76.8% 100.0%
4ye6A01 1.10.8.1290 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1, domain 1 0.60 42.0 3.96e-01 96.3% 58.7%
1u61A00 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.60 43.0 3.82e-01 78.0% 96.9%
2icwG01 1.20.120.390 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hla class ii histocompatibility antigen, dr alpha chain. Chain D, domain 1 0.59 53.0 4.65e-01 100.0% 75.8%
1nmrA01 1.10.1900.10 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein 0.59 45.0 4.67e-01 90.2% 92.1%
3mvpA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 47.0 3.93e-01 90.2% 99.3%
5dajD00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 47.0 3.56e-01 89.0% 44.3%
1qasA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 38.0 3.73e-01 72.0% 76.1%
3vygE00 1.10.472.20 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Nitrile hydratase, beta subunit 0.53 40.0 3.37e-01 98.8% 45.0%
1fkaG00 1.10.455.10 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 0.50 42.0 3.69e-01 96.3% 81.2%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4488970 148.1.3.328 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › InvH 0.67 50.0 5.50e-01 79.3% 100.0%
3595345 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.64 47.0 4.61e-01 78.0% 72.2%
3050 102.3.1.1 ↗ alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain › EIF_2_alpha 0.63 53.0 5.16e-01 95.1% 83.5%
4348123 3236.1.1.16 ↗ alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Asp-Al_Ex 0.62 55.0 3.60e-01 96.3% 69.3%
5059279 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.62 49.0 4.96e-01 84.1% 93.8%
4976283 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.61 50.0 4.42e-01 87.8% 70.4%
3834805 109.3.1.397 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › NPR1_like_C, Ank_2 0.55 48.0 3.33e-01 96.3% 45.4%
D3 medium residues 43-99
PDB
D4 medium residues 425-488
PDB