HNH_homing_endonuclease

Euk-Vir

Brazilian_marseillevirus

HNH_homing_endonuclease__YP_009238976__Brazilian_marseillevirus__1813599

Identity

77.6 mean pLDDT

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Brazilian_marseillevirus

TaxID: 1813599

View cluster (6 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-91

PDB

Domain cluster: rep: OP056089.1__UYD72102.1__X__00002__D5-102

D2 high residues 434-539

PDB

Domain cluster: rep: OP056089.1__UYD72102.1__X__00002__D5-102

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF13392.13 best	HNH_3	51.6	7.90e-14	44.3%	97.8%

D3 medium residues 105-155

PDB

Domain cluster: rep: IMGVR_UViG_3300021426_000003-3300021426-Ga0224482_10000072181__D164-213

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1u3eM02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.85	74.0	6.62e-01	100.0%	70.6%
2qqrA02	3.10.330.70	Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 ›	0.55	46.0	4.56e-01	100.0%	98.1%
1pjuA01	3.30.60.30	Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 ›	0.55	38.0	3.55e-01	100.0%	58.7%
2la7A01	2.40.128.270	Mainly Beta › Beta Barrel › Lipocalin ›	0.52	42.0	3.30e-01	100.0%	85.9%
4r2fA02	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.51	35.0	2.45e-01	72.5%	83.9%
4kqdB00	3.30.450.20	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain	0.51	41.0	3.30e-01	98.0%	83.6%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3171408	101.1.14.3 ↗	alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1	0.87	75.0	7.59e-01	98.0%	96.0%
4414927	101.1.14.3 ↗	alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1	0.86	75.0	6.78e-01	100.0%	71.0%
2643961	2492.1.1.1 ↗	a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1	0.51	44.0	3.21e-01	100.0%	36.1%

D4 medium residues 166-256

PDB

Domain cluster: rep: OP056089.1__UYD72102.1__X__00002__D5-102

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF13392.13 best	HNH_3	34.1	2.20e-08	51.6%	97.8%

D5 medium residues 262-365

PDB

Domain cluster: rep: OP056089.1__UYD72102.1__X__00002__D5-102