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HQ123588.1ADW08984.1CN77-1-1__00001

Bact-Vir

HQ123588.1__ADW08984.1__CN77-1-1__00001

Identity

Accession:: HQ123588 ↗
Kingdom:: phage

Quality

84.1 mean pLDDT

Taxonomy

Clavibacter_phage_CN77

TaxID: 686440

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-78

PDB

Domain cluster: rep: SRR1747018_scaffold_0_prodigal-single.1__X__X__00097__D226-322

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2vugA03	3.30.470.30	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme	0.60	50.0	4.60e-01	93.5%	86.3%
3omzA01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.56	34.0	3.13e-01	92.2%	46.6%
3kreA02	3.30.470.20	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain	0.53	43.0	3.61e-01	90.9%	88.6%
5cw3C01	3.40.140.10	Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2	0.53	37.0	3.06e-01	87.0%	38.1%
1gep001	3.30.413.10	Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1	0.52	43.0	3.45e-01	98.7%	84.5%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3273589	206.1.3.0 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp	0.67	59.0	4.00e-01	100.0%	40.8%
2526324	7086.1.1.0 ↗		0.66	40.0	3.72e-01	93.5%	48.4%
3499110	2004.1.1.14 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU	0.52	39.0	2.53e-01	80.5%	23.5%

D2 high residues 119-223

PDB

Domain cluster: rep: IMGVR_UViG_3300009518_000248-3300009518-Ga0116128_10067588__D264-374

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4v1gA00	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.73	42.0	4.64e-01	75.2%	70.6%
3ljbA00	1.20.120.1240	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Dynamin, middle domain	0.61	56.0	4.34e-01	100.0%	86.8%
2wzkA03	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.60	41.0	4.12e-01	87.6%	67.3%
5svlA01	1.10.287.940	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel	0.57	34.0	4.08e-01	88.6%	91.2%
2pmsC00	6.10.140.920	Special › Helix non-globular › Helix Hairpins ›	0.56	46.0	4.63e-01	89.5%	88.1%
3ctwB00	1.10.8.930	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Protein of unknown function DUF1465	0.56	43.0	4.13e-01	87.6%	70.0%
2i6hA02	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.55	31.0	3.30e-01	77.1%	61.5%
6adqG01	1.20.120.80	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle	0.53	48.0	4.03e-01	100.0%	76.4%
6yz2A01	1.20.120.350	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C	0.53	41.0	3.95e-01	92.4%	71.7%
2g3vA00	1.20.120.1140	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CAG pathogenicity island protein 13, CagS	0.52	39.0	3.38e-01	86.7%	50.9%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3620725	5041.1.1.17 ↗	extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › Periphilin_C	0.72	50.0	5.00e-01	84.8%	70.5%
4149779	547.1.1.1 ↗	alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer	0.69	42.0	4.21e-01	81.0%	59.1%
3631218	622.4.1.0 ↗	alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related	0.68	45.0	4.71e-01	80.0%	73.7%
4941415	1076.1.1.0 ↗	alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related	0.66	45.0	4.01e-01	70.5%	68.7%
4025710	3871.1.1.0 ↗	alpha duplicates or obligate multimers › PHIST › PHIST › PHIST	0.61	50.0	4.71e-01	86.7%	76.8%
3806047	5050.1.1.26 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › UVB_sens_prot	0.58	41.0	3.01e-01	72.4%	55.5%
3404270	377.1.1.0 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like	0.57	41.0	3.81e-01	74.3%	63.1%
3610711	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.55	44.0	3.70e-01	88.6%	63.2%
3799451	632.22.1.128 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › Macoilin	0.54	44.0	3.71e-01	86.7%	64.6%
3276285	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.54	46.0	4.32e-01	90.5%	92.8%
3891331	621.1.1.0 ↗	alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain	0.54	39.0	3.66e-01	75.2%	69.2%
3783608	171.1.1.0 ↗	alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like	0.53	45.0	4.07e-01	94.3%	81.3%