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HQ141410.1__ADW01240.1__X__00016

Bact-Vir

HQ141410.1__ADW01240.1__X__00016

Identity

Accession:
HQ141410 ↗
Kingdom:
phage

Quality

80.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lafunavirus› Lactobacillus_phage_LF1

TaxID: 947980

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-95
PDB
Domain cluster: rep: IMGVR_UViG_3300001784_000289-3300001784-JGI20225J20221_10000041414__D5-96
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18994.7 best Prophage_tailD1 77.8 7.90e-22 94.4% 94.0%
CATH (61)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.93 77.0 8.22e-01 94.4% 97.5%
1wruA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.76 65.0 5.13e-01 95.6% 47.4%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.73 48.0 4.71e-01 78.9% 62.5%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.73 61.0 6.06e-01 90.0% 96.8%
3f3bA00 2.40.10.370 Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 0.71 66.0 6.02e-01 100.0% 93.9%
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.71 62.0 4.94e-01 94.4% 52.9%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.70 59.0 5.81e-01 92.2% 98.0%
1twfB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.69 49.0 4.42e-01 74.4% 94.4%
3cddA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.68 59.0 4.65e-01 94.4% 46.2%
2pmzB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.68 48.0 4.36e-01 74.4% 94.4%
4l82A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 60.0 4.97e-01 97.8% 74.4%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.67 56.0 5.13e-01 97.8% 69.2%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 60.0 4.80e-01 97.8% 72.7%
4f07E00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 59.0 4.97e-01 97.8% 75.8%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 59.0 4.92e-01 97.8% 74.3%
2gysA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 48.0 4.90e-01 81.1% 80.2%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.65 55.0 4.94e-01 92.2% 75.2%
3pftA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 56.0 4.68e-01 97.8% 74.4%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.63 53.0 4.81e-01 97.8% 68.0%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 55.0 4.66e-01 97.8% 59.2%
2x8kA01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.63 56.0 5.36e-01 98.9% 88.6%
1u8sA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 42.0 4.32e-01 82.2% 73.8%
1t7vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 44.0 4.42e-01 81.1% 74.4%
2qrrA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 40.0 3.96e-01 86.7% 62.9%
1sc6A03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 37.0 3.90e-01 77.8% 67.1%
1h4uA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.60 46.0 3.39e-01 82.2% 85.7%
1zpvA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 41.0 4.25e-01 82.2% 75.3%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 45.0 4.30e-01 80.0% 71.2%
5mmiU01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 43.0 4.47e-01 80.0% 82.9%
4hh2B03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 46.0 4.44e-01 81.1% 90.0%
1xuvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 44.0 3.63e-01 78.9% 78.5%
4labA00 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.59 42.0 3.34e-01 74.4% 42.2%
1g84A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 45.0 4.30e-01 81.1% 70.5%
5heeA00 3.40.830.10 Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like 0.59 43.0 3.13e-01 76.7% 96.9%
3eeeA00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.59 50.0 3.97e-01 94.4% 60.1%
4wsqB00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.59 45.0 3.07e-01 81.1% 42.3%
3gnlA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 42.0 3.41e-01 84.4% 40.6%
2kvoA01 2.40.30.220 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 0.58 49.0 4.76e-01 98.9% 83.7%
5is2A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 40.0 4.00e-01 87.8% 70.3%
2ausC02 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.57 40.0 3.14e-01 72.2% 34.9%
3ub0A02 3.30.70.3540 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nsp8 replicase, head domain 0.57 50.0 5.02e-01 96.7% 98.9%
2qswA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 37.0 3.74e-01 81.1% 65.6%
3ibwA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 36.0 3.77e-01 82.2% 72.2%
3a7rA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 44.0 3.24e-01 84.4% 75.4%
6ya6A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 42.0 4.08e-01 78.9% 71.4%
7dl8C01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.56 43.0 4.35e-01 97.8% 82.0%
2q7aA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 49.0 4.15e-01 97.8% 65.1%
3wraA01 3.40.830.10 Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like 0.56 41.0 2.91e-01 77.8% 88.4%
2fbjH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 40.0 4.30e-01 81.1% 94.5%
1mruA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 41.0 4.10e-01 80.0% 82.6%
1a1xA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.55 47.0 4.48e-01 94.4% 91.5%
1g3pA02 3.90.450.1 Alpha Beta › Alpha-Beta Complex › Minor Coat Protein; domain 2 › Minor Coat Protein; Domain 2 0.55 37.0 3.59e-01 71.1% 62.5%
2yqzA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 40.0 3.10e-01 76.7% 77.2%
1s67L00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 41.0 3.74e-01 80.0% 80.7%
4q7aC02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 42.0 4.01e-01 86.7% 70.4%
3f62A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.80e-01 80.0% 69.4%
5qinA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 40.0 4.13e-01 80.0% 84.7%
4l68A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 39.0 3.67e-01 77.8% 95.5%
8fd9A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 36.0 3.87e-01 78.9% 84.4%
3i4hX02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 39.0 3.76e-01 81.1% 74.0%
5w7tA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 37.0 3.69e-01 78.9% 75.3%
ECOD (84)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031786 1.1.13.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.94 85.0 8.80e-01 93.3% 98.8%
4883825 1.1.13.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.94 90.0 8.92e-01 98.9% 96.7%
185291 1.1.13.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.93 78.0 8.29e-01 95.6% 97.5%
4031285 1.1.13.64 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › TT1_Tal 0.86 80.0 8.03e-01 97.8% 97.8%
4954563 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.84 74.0 7.60e-01 96.7% 98.8%
3059162 1.1.13.30 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_GP41 0.76 70.0 6.23e-01 100.0% 94.4%
3604610 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.76 53.0 6.10e-01 74.4% 100.0%
3943285 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 68.0 6.38e-01 97.8% 97.2%
184486 1.1.13.26 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st 0.75 60.0 6.26e-01 95.6% 93.8%
5001586 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.75 52.0 5.22e-01 96.7% 71.1%
4988103 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 64.0 6.28e-01 95.6% 93.7%
5002662 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 62.0 6.03e-01 92.2% 86.0%
3981654 1.1.13.40 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.72 61.0 5.74e-01 92.2% 100.0%
5038876 1.1.13.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach 0.71 63.0 6.33e-01 94.4% 95.6%
4608778 1.1.7.107 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 0.70 56.0 5.04e-01 85.6% 63.3%
2642578 1.1.13.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.70 62.0 5.85e-01 98.9% 92.7%
4031205 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.69 61.0 4.74e-01 97.8% 66.2%
4482805 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.69 61.0 4.71e-01 97.8% 64.6%
3941539 1.1.13.40 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.68 62.0 5.86e-01 97.8% 100.0%
4032883 1.1.13.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.68 60.0 5.72e-01 96.7% 93.3%
3970830 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.68 60.0 5.78e-01 94.4% 94.0%
3956293 1.1.5.75 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF4873 0.67 53.0 5.17e-01 96.7% 77.0%
3312923 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.67 48.0 4.71e-01 81.1% 69.5%
3945543 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 57.0 5.89e-01 93.3% 100.0%
4217713 327.21.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › SpoIIE regulatory domain › SpoIIE regulatory domain › PF31108 0.67 52.0 5.41e-01 100.0% 88.2%
3364258 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.67 46.0 4.73e-01 81.1% 73.9%
4030568 331.10.1.1 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox 0.67 51.0 3.45e-01 82.2% 45.1%
3868227 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 48.0 4.75e-01 80.0% 71.6%
3308135 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.66 45.0 4.54e-01 80.0% 70.0%
1501 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 48.0 4.73e-01 80.0% 73.4%
1320672 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.65 56.0 3.95e-01 92.2% 75.7%
3206876 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 47.0 4.46e-01 82.2% 63.6%
3289340 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 45.0 4.77e-01 82.2% 82.5%
3256920 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 58.0 5.16e-01 98.9% 99.2%
3734783 2003.1.9.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.64 47.0 3.05e-01 76.7% 95.6%
4444321 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.63 52.0 3.97e-01 90.0% 65.1%
3965912 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.63 46.0 4.52e-01 75.6% 90.5%
5057874 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.63 48.0 3.65e-01 80.0% 46.8%
4087300 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.62 42.0 4.06e-01 71.1% 85.7%
5009533 314.1.1.12 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.62 49.0 3.55e-01 85.6% 78.0%
4196383 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.61 40.0 3.95e-01 85.6% 61.0%
4054495 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.61 45.0 4.35e-01 80.0% 70.0%
4219826 304.102.1.3 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.60 43.0 3.19e-01 75.6% 56.9%
4364438 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.60 40.0 3.98e-01 85.6% 64.9%
3559409 11.1.1.609 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NTCP5_P3_N 0.59 42.0 4.05e-01 80.0% 64.8%
4259247 1.11.1.1 ↗ beta barrels › cradle loop barrel › Photosystem II accessory factor Psb28 › Photosystem II accessory factor Psb28 › Psb28 0.59 49.0 4.77e-01 98.9% 83.8%
4475204 304.102.1.3 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.58 42.0 3.09e-01 75.6% 56.2%
2877144 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.58 48.0 3.39e-01 92.2% 69.1%
4672169 304.102.1.3 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.58 42.0 3.11e-01 75.6% 55.9%
4438946 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.58 40.0 4.16e-01 83.3% 77.6%
4604606 304.102.1.3 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.57 41.0 3.04e-01 75.6% 54.2%
4337358 304.102.1.3 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.57 41.0 3.02e-01 75.6% 53.5%
3220701 206.1.1.55 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL 0.57 43.0 2.96e-01 82.2% 24.9%
4369841 304.102.1.3 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.57 41.0 3.05e-01 75.6% 57.1%
5029901 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.57 43.0 3.38e-01 81.1% 55.7%
4067859 304.102.1.3 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.57 40.0 3.04e-01 75.6% 56.3%
4071868 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.57 39.0 4.00e-01 84.4% 73.3%
4451796 304.102.1.3 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.57 40.0 3.02e-01 75.6% 56.2%
3350908 304.102.1.3 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.57 41.0 2.96e-01 75.6% 52.2%
4266150 304.102.1.3 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.56 40.0 3.02e-01 75.6% 54.5%
3827488 319.1.1.15 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF27746 0.56 42.0 3.96e-01 80.0% 80.9%
4304256 304.102.1.3 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.56 42.0 3.11e-01 80.0% 57.4%
4246888 304.102.1.3 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.55 39.0 2.92e-01 74.4% 46.4%
3932880 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 42.0 2.95e-01 81.1% 45.5%
4162000 304.102.1.3 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.55 39.0 2.91e-01 75.6% 44.6%
4569317 304.102.1.3 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.55 41.0 3.04e-01 80.0% 54.5%
4385879 304.102.1.3 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.55 39.0 2.89e-01 74.4% 54.1%
4137463 325.1.7.8 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RnfC_N 0.55 37.0 3.94e-01 71.1% 93.8%
4024901 328.3.1.0 ↗ a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain 0.54 40.0 4.13e-01 84.4% 82.4%
3547494 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.54 41.0 3.73e-01 80.0% 66.7%
4353877 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.54 39.0 3.86e-01 85.6% 71.6%
4069712 304.102.1.4 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.54 43.0 3.41e-01 87.8% 39.5%
4350586 304.102.1.3 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.54 38.0 2.83e-01 74.4% 51.6%
3675284 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.54 42.0 3.98e-01 82.2% 85.7%
5029520 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.54 45.0 3.97e-01 96.7% 60.7%
3613752 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 41.0 2.94e-01 82.2% 46.2%
3689674 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.54 41.0 3.70e-01 82.2% 74.2%
3261398 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 41.0 2.94e-01 83.3% 94.0%
3734384 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 41.0 3.93e-01 82.2% 88.3%
4473668 304.102.1.1 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.52 38.0 3.12e-01 75.6% 46.5%
4175825 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.52 36.0 4.11e-01 71.1% 100.0%
3251396 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.66e-01 83.3% 67.6%
3434296 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 36.0 3.42e-01 73.3% 84.5%
4175826 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.50 35.0 3.95e-01 72.2% 100.0%
D2 high residues 97-178
PDB
Domain cluster: rep: OP142323.1__UVD33254.1__X__00017__D443-515
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26674.1 best Prophage_tail_N2 38.6 1.60e-09 95.1% 93.2%
D3 high residues 239-332
PDB
Domain cluster: rep: IMGVR_UViG_3300025164_001536-3300025164-Ga0209521_100157071__D3-75
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qsaA03 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.73 68.0 5.47e-01 100.0% 56.1%
4yibA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.73 67.0 5.55e-01 100.0% 58.9%
6cfcA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.71 65.0 5.36e-01 98.9% 57.1%
1iizA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.71 65.0 6.00e-01 100.0% 78.3%
2dqaA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.71 63.0 5.71e-01 95.7% 74.0%
4yf2A00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.70 64.0 5.72e-01 100.0% 76.9%
4c5fA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.69 64.0 5.19e-01 100.0% 62.5%
1hfxA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.68 62.0 5.64e-01 100.0% 78.9%
2kebA00 1.10.8.530 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › DNA polymerase alpha-primase, subunit B, N-terminal domain 0.66 43.0 4.69e-01 100.0% 80.8%
3dl1A01 1.10.472.150 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Glucose-regulated metallo-peptidase M90, N-terminal domain 0.57 39.0 3.92e-01 100.0% 68.7%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4032309 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.98 96.0 8.93e-01 100.0% 88.2%
3960956 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.90 85.0 7.74e-01 100.0% 93.3%
4034362 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.90 85.0 7.99e-01 100.0% 97.3%
3288544 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.89 85.0 7.81e-01 100.0% 90.4%
3587750 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.89 85.0 8.11e-01 100.0% 94.3%
3281310 235.1.1.19 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT_2 0.79 73.0 5.53e-01 100.0% 67.6%
3978932 235.1.1.35 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › DUF1615 0.75 69.0 5.31e-01 100.0% 52.5%
3279121 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.74 61.0 6.12e-01 100.0% 88.3%
3289790 235.1.1.23 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme2 0.73 67.0 5.62e-01 100.0% 76.1%
4258903 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.71 66.0 5.35e-01 100.0% 64.8%
4530587 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.70 65.0 5.12e-01 100.0% 56.8%
3547029 148.1.3.221 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › NPHP3_hel 0.66 43.0 4.55e-01 100.0% 74.1%
3590548 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.56 42.0 3.18e-01 86.2% 32.9%
None — 0.54 50.0 3.70e-01 100.0% 48.3%
D4 high residues 359-513
PDB
Domain cluster: rep: LR990834.1__CAD7757509.1__ATHO_20__00020__D167-317
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01551.30 best Peptidase_M23 45.1 1.30e-11 62.6% 92.7%
D5 medium residues 182-204_569-627
PDB
Domain cluster: rep: IMGVR_UViG_3300009618_000029-3300009618-Ga0116127_100074338__D532-550_611-692
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.80 74.0 5.62e-01 98.8% 52.3%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.77 68.0 6.45e-01 96.3% 95.8%
3cddA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.73 66.0 5.02e-01 98.8% 45.1%
2wzpR01 2.30.300.20 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Phage tail base-plate attachment protein, domain D1/D2 0.70 58.0 4.44e-01 97.6% 38.8%
2f8xC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 44.0 4.25e-01 90.2% 56.4%
2pmzB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.64 48.0 4.20e-01 79.3% 93.5%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.64 54.0 5.17e-01 91.5% 80.6%
3cnrB00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.63 53.0 5.10e-01 95.1% 81.7%
2ok7A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 51.0 4.64e-01 93.9% 71.4%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.60 34.0 3.18e-01 91.5% 45.1%
1s3rA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.59 33.0 4.01e-01 82.9% 84.9%
3en9A03 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 47.0 4.97e-01 84.1% 100.0%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.59 38.0 3.47e-01 96.3% 50.0%
5ylyA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 48.0 4.34e-01 92.7% 65.2%
5gj7A02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.58 49.0 4.71e-01 95.1% 93.6%
6u7jA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 39.0 3.85e-01 85.4% 62.9%
4c2mA09 3.30.70.2850 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 47.0 3.70e-01 87.8% 85.1%
1j6wA00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.58 46.0 3.65e-01 84.1% 49.1%
1a1xA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.58 50.0 4.63e-01 95.1% 91.5%
4rm7A02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.58 49.0 4.53e-01 97.6% 85.3%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.57 34.0 3.35e-01 92.7% 54.7%
3hvnA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.57 31.0 3.77e-01 81.7% 83.0%
1d7kB01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.57 43.0 3.67e-01 80.5% 81.2%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.57 48.0 4.37e-01 93.9% 91.0%
6vbkA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.56 47.0 4.30e-01 95.1% 80.2%
1svbA04 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 42.0 4.04e-01 84.1% 68.8%
1hkvA01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.56 41.0 3.18e-01 79.3% 55.1%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.56 38.0 3.81e-01 84.1% 69.0%
3hn5A02 2.60.40.2060 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 44.0 3.98e-01 86.6% 65.2%
3b5hA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 37.0 3.76e-01 86.6% 68.3%
1kyfA01 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.54 45.0 3.88e-01 92.7% 68.7%
2k8qA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 44.0 3.79e-01 90.2% 59.7%
1jssA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 44.0 3.34e-01 89.0% 72.9%
4eq3A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 38.0 3.65e-01 85.4% 62.2%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 38.0 3.55e-01 76.8% 78.9%
3w1zC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 3.77e-01 91.5% 86.2%
3t1oA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 38.0 2.93e-01 100.0% 32.8%
2wllA02 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.52 41.0 3.47e-01 86.6% 51.7%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.52 41.0 3.71e-01 89.0% 83.5%
2dbjA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.68e-01 89.0% 62.4%
4ufcA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.52 43.0 2.96e-01 96.3% 46.1%
4fxtA02 2.60.40.2060 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 3.67e-01 84.1% 64.5%
4pmwA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 40.0 3.90e-01 97.6% 74.7%
3d4eA02 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.51 38.0 3.89e-01 84.1% 82.1%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 40.0 3.11e-01 89.0% 72.9%
8owfA01 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 39.0 3.62e-01 87.8% 81.1%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031753 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.85 80.0 7.56e-01 100.0% 87.4%
5041375 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.79 73.0 7.06e-01 100.0% 91.1%
3970830 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.79 73.0 6.77e-01 100.0% 95.0%
4929759 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.78 69.0 5.48e-01 96.3% 98.8%
3945543 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.78 70.0 7.00e-01 97.6% 95.3%
4033714 1.1.13.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tail 0.76 67.0 6.42e-01 96.3% 91.6%
3590379 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.76 67.0 6.49e-01 95.1% 95.6%
4647050 1.1.13.56 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › YQBQ 0.76 68.0 6.87e-01 98.8% 100.0%
3973341 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 68.0 6.74e-01 97.6% 97.6%
3206625 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.74 37.0 4.77e-01 87.8% 86.7%
5034906 205.1.1.16 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 0.71 52.0 4.23e-01 80.5% 41.2%
4889790 3071.1.1.7 ↗ a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › PF30637 0.71 64.0 5.04e-01 100.0% 96.4%
3588729 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 60.0 5.78e-01 93.9% 94.7%
3969735 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 54.0 5.76e-01 96.3% 95.7%
3605269 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 58.0 5.47e-01 93.9% 74.0%
2475125 3071.1.1.7 ↗ a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › PF30637 0.70 61.0 4.94e-01 96.3% 93.0%
3997045 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.70 53.0 5.11e-01 90.2% 70.5%
3720023 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 58.0 5.45e-01 95.1% 74.0%
3210962 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 57.0 5.45e-01 95.1% 76.8%
3237729 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 56.0 5.19e-01 87.8% 71.4%
3974181 1.1.5.88 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PF29489 0.68 56.0 5.43e-01 96.3% 81.1%
5056905 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.67 51.0 4.96e-01 87.8% 73.3%
4608778 1.1.7.107 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 0.67 56.0 4.93e-01 92.7% 62.5%
4061526 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.66 52.0 4.86e-01 91.5% 69.0%
3667194 1.1.7.24 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.66 50.0 4.28e-01 81.7% 50.8%
5052888 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 55.0 4.80e-01 91.5% 68.8%
3945286 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 51.0 4.69e-01 90.2% 64.8%
4943219 205.1.1.123 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer2_BFD 0.65 52.0 4.24e-01 86.6% 77.4%
5057694 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.65 51.0 4.83e-01 92.7% 71.0%
3660388 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 48.0 4.74e-01 92.7% 74.4%
4452870 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.63 49.0 4.76e-01 95.1% 75.6%
4232299 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.63 52.0 4.97e-01 91.5% 100.0%
4223333 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 50.0 4.68e-01 92.7% 68.6%
4091836 1.1.7.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_1 0.63 52.0 4.42e-01 90.2% 55.6%
4323001 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.63 53.0 5.03e-01 96.3% 100.0%
4927612 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 50.0 4.71e-01 86.6% 72.0%
3247872 11.1.1.843 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.62 49.0 4.29e-01 85.4% 60.8%
4089549 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.62 51.0 4.94e-01 92.7% 100.0%
4666540 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.61 46.0 4.62e-01 95.1% 80.0%
3277296 11.1.1.843 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.61 49.0 4.20e-01 86.6% 61.5%
4203993 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.61 47.0 4.52e-01 95.1% 72.6%
1944061 11.1.1.279 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TarS_C1 0.61 46.0 3.84e-01 90.2% 47.1%
4063137 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.60 46.0 4.54e-01 96.3% 76.7%
4597893 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.59 51.0 4.81e-01 98.8% 100.0%
3291189 4052.1.1.0 ↗ beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like 0.59 49.0 4.69e-01 96.3% 93.0%
4678134 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.59 46.0 4.32e-01 92.7% 69.0%
3550813 4956.1.1.0 ↗ a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.59 47.0 4.54e-01 92.7% 75.8%
4246654 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.59 49.0 4.70e-01 97.6% 97.0%
3257029 11.1.1.801 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7035 0.58 47.0 3.92e-01 86.6% 50.7%
3762105 11.1.1.1118 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28312 0.58 45.0 3.87e-01 84.1% 51.1%
3290541 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.58 35.0 3.91e-01 92.7% 76.9%
5063361 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 44.0 4.13e-01 87.8% 65.7%
3248639 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.57 42.0 4.03e-01 92.7% 65.0%
4956917 11.1.1.15 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD 0.57 45.0 4.15e-01 84.1% 70.5%
3889455 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 46.0 3.09e-01 87.8% 22.9%
3788725 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.57 46.0 4.23e-01 92.7% 67.3%
5017141 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 44.0 3.86e-01 84.1% 58.3%
4259726 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.56 44.0 2.92e-01 87.8% 25.5%
3849067 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 4.04e-01 86.6% 70.0%
3664223 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.55 41.0 4.57e-01 87.8% 100.0%
3331837 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 45.0 3.26e-01 87.8% 34.3%
3265117 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 3.98e-01 86.6% 68.7%
3166772 4958.1.1.0 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit 0.55 45.0 4.20e-01 90.2% 70.5%
3270768 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 44.0 4.06e-01 86.6% 88.6%
4012772 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 39.0 3.36e-01 96.3% 48.8%
4389823 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.54 44.0 3.73e-01 87.8% 68.9%
5062578 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 3.98e-01 84.1% 70.5%
3099010 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 43.0 3.82e-01 87.8% 79.0%
3757488 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.53 38.0 4.06e-01 85.4% 88.6%
3865052 220.1.1.21 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SPT16 0.53 39.0 3.25e-01 98.8% 45.0%
3250648 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.53 41.0 3.86e-01 84.1% 71.0%
3742224 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.73e-01 85.4% 66.0%
3583745 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 44.0 3.76e-01 97.6% 97.9%
4293664 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 41.0 3.53e-01 87.8% 69.6%
3285280 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 42.0 3.63e-01 89.0% 70.8%
3554870 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.51 41.0 3.17e-01 90.2% 72.7%
D6 medium residues 205-223_514-568
PDB
Domain cluster: rep: MG835450.1__AUV61428.1__phiPsal1_019__00019__D243-303
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06605.19 best Prophage_tail 30.8 3.90e-07 100.0% 36.0%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2py5A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 44.0 3.39e-01 94.6% 97.8%
3ddcB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 39.0 3.31e-01 79.7% 60.2%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031752 3071.1.1.2 ↗ a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › Prophage_tail 0.86 77.0 7.94e-01 100.0% 100.0%
119371 3071.1.1.2 ↗ a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › Prophage_tail 0.81 64.0 6.77e-01 98.6% 98.4%
4033373 3071.1.1.0 ↗ a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins 0.78 62.0 6.54e-01 95.9% 96.9%
4929759 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.76 60.0 4.58e-01 100.0% 38.7%
4049733 3071.1.1.8 ↗ a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › YQBQ 0.75 58.0 6.13e-01 100.0% 95.4%
3964699 3071.1.1.6 ↗ a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › Phage-tail_3 0.72 60.0 6.19e-01 100.0% 95.7%
4957567 3071.1.1.0 ↗ a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins 0.67 57.0 5.82e-01 100.0% 98.6%
5062078 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.55 40.0 2.74e-01 79.7% 91.7%
3675836 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 40.0 3.41e-01 81.1% 91.1%
4996642 2007.1.3.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding 0.52 44.0 3.30e-01 98.6% 66.2%
3738296 2498.1.1.155 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › PF30956 0.52 43.0 2.86e-01 95.9% 99.4%
3812167 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 35.0 3.25e-01 70.3% 100.0%
3664751 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.52 36.0 3.29e-01 90.5% 54.0%
3304311 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.50 36.0 3.16e-01 79.7% 92.8%