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HQ225832.1__ADX42565.1__X__00045
Bact-VirHQ225832.1__ADX42565.1__X__00045
Identity
- Accession:
- HQ225832 ↗
- Kingdom:
- phage
Quality
86.7
mean pLDDT
Taxonomy
TaxID: 981335
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-51
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3wctD00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.63 | 46.0 | 3.39e-01 | 80.4% | 29.3% |
| 2g80A02 | 1.10.720.60 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.63 | 43.0 | 3.79e-01 | 72.5% | 97.4% |
| 1tfeA02 | 1.10.286.20 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.63 | 44.0 | 4.57e-01 | 76.5% | 84.4% |
| 4k7cA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.61 | 52.0 | 3.11e-01 | 100.0% | 19.8% |
| 1bh9B00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.60 | 47.0 | 4.08e-01 | 92.2% | 78.7% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.59 | 42.0 | 3.56e-01 | 80.4% | 44.4% |
| 4ex8A00 | 3.40.1790.10 | Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain | 0.57 | 45.0 | 2.85e-01 | 90.2% | 92.0% |
| 1j09A04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.57 | 36.0 | 3.70e-01 | 70.6% | 64.6% |
| 1hlvA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.57 | 39.0 | 3.83e-01 | 76.5% | 66.7% |
| 3f2eA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 46.0 | 4.10e-01 | 100.0% | 97.6% |
| 5je8B02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.56 | 42.0 | 3.35e-01 | 92.2% | 40.6% |
| 1qd1B02 | 3.30.70.670 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formiminotransferase, C-terminal subdomain | 0.56 | 41.0 | 3.04e-01 | 82.4% | 43.4% |
| 3dkqA02 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.55 | 37.0 | 3.83e-01 | 74.5% | 85.1% |
| 2a3vB01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.54 | 43.0 | 3.67e-01 | 98.0% | 51.1% |
| 3g0tA02 | 6.10.120.10 | Special › Helix non-globular › 434 Repressor (Amino-terminal Domain) › Bacterial aspartate aminotransferase, helical domain | 0.50 | 37.0 | 3.51e-01 | 88.2% | 92.9% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3750567 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 49.0 | 2.93e-01 | 74.5% | 11.1% |
| 3391605 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 48.0 | 4.50e-01 | 76.5% | 63.1% |
| 3036753 | 397.7.1.0 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 | 0.63 | 47.0 | 4.68e-01 | 84.3% | 76.8% |
| 5030164 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.63 | 45.0 | 4.11e-01 | 76.5% | 74.3% |
| 2474880 | 397.7.1.0 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 | 0.60 | 45.0 | 4.60e-01 | 90.2% | 91.8% |
| 5082787 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.60 | 41.0 | 3.42e-01 | 74.5% | 82.0% |
| 4449291 | 7569.1.1.0 ↗ | a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like | 0.57 | 40.0 | 2.85e-01 | 92.2% | 21.7% |
| 3479969 | 109.4.1.584 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fis1_TPR_C | 0.56 | 39.0 | 2.96e-01 | 74.5% | 27.4% |
| 4998613 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.55 | 44.0 | 3.64e-01 | 92.2% | 48.0% |
| 3706397 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 38.0 | 3.62e-01 | 82.4% | 72.3% |
| 5040510 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.52 | 42.0 | 2.80e-01 | 94.1% | 81.2% |
| 3295575 | 284.1.3.2 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C | 0.52 | 36.0 | 3.08e-01 | 76.5% | 42.0% |
| 3929725 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.51 | 36.0 | 3.08e-01 | 90.2% | 42.1% |
| 3574433 | 604.1.1.125 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SYNRG_C | 0.51 | 38.0 | 2.89e-01 | 88.2% | 84.7% |
| 3489209 | 101.1.10.33 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Rrn7_cyclin_C | 0.51 | 43.0 | 3.51e-01 | 100.0% | 99.0% |
D2
medium
residues 52-133
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2h7oA01 | 1.20.120.1330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Rac1-binding domain, N-terminal GTPase binding subdomain | 0.73 | 53.0 | 4.62e-01 | 75.6% | 54.5% |
| 5kdiA00 | 1.10.3520.10 | Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein | 0.71 | 56.0 | 4.13e-01 | 84.1% | 85.3% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.71 | 52.0 | 4.67e-01 | 78.0% | 67.2% |
| 2uvaG01 | 1.20.1050.120 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.70 | 60.0 | 5.11e-01 | 95.1% | 72.8% |
| 1hciA03 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 50.0 | 4.45e-01 | 76.8% | 83.3% |
| 7k18A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.68 | 47.0 | 3.96e-01 | 70.7% | 74.6% |
| 2xzmO02 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.66 | 51.0 | 5.45e-01 | 80.5% | 100.0% |
| 3m0fB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.66 | 50.0 | 4.38e-01 | 81.7% | 93.5% |
| 1b48A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.64 | 47.0 | 4.29e-01 | 78.0% | 78.0% |
| 1te4A01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.63 | 43.0 | 4.22e-01 | 96.3% | 65.2% |
| 6l1kA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.62 | 47.0 | 3.53e-01 | 80.5% | 62.4% |
| 4dvyP01 | 1.10.357.130 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.62 | 49.0 | 3.70e-01 | 85.4% | 74.6% |
| 1nigA00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.60 | 44.0 | 3.69e-01 | 78.0% | 84.2% |
| 8sbeA02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.59 | 45.0 | 3.49e-01 | 82.9% | 57.2% |
| 2wzkA03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.58 | 44.0 | 4.02e-01 | 80.5% | 95.5% |
| 3fblA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 42.0 | 4.25e-01 | 76.8% | 78.0% |
| 3p3lA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.55 | 46.0 | 2.99e-01 | 93.9% | 63.5% |
| 1txuA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.55 | 39.0 | 3.82e-01 | 75.6% | 77.7% |
| 2dt7B01 | 1.10.10.790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module | 0.54 | 37.0 | 4.22e-01 | 80.5% | 98.3% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 38.0 | 3.62e-01 | 79.3% | 62.6% |
| 2k85A00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.50 | 37.0 | 4.01e-01 | 79.3% | 100.0% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3739283 | 3322.1.1.1 ↗ | alpha bundles › N-terminal domain in fatty acid synthase subunit beta › N-terminal domain in fatty acid synthase subunit beta › N-terminal domain in fatty acid synthase subunit beta › FAS_N | 0.74 | 64.0 | 5.47e-01 | 95.1% | 76.2% |
| 3499018 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.70 | 57.0 | 5.43e-01 | 87.8% | 93.7% |
| 4978572 | 604.17.1.1 ↗ | alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like › DUF447_C | 0.69 | 50.0 | 5.37e-01 | 78.0% | 97.1% |
| 3781427 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.68 | 50.0 | 4.37e-01 | 79.3% | 55.2% |
| 3750000 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.67 | 50.0 | 4.64e-01 | 79.3% | 91.4% |
| 5056992 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 56.0 | 4.74e-01 | 96.3% | 57.2% |
| 5022337 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.62 | 47.0 | 4.45e-01 | 82.9% | 70.0% |
| 3941457 | 1203.1.2.3 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › YiaAB | 0.59 | 48.0 | 4.22e-01 | 87.8% | 83.3% |
| 3396737 | 5060.1.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 | 0.58 | 48.0 | 4.72e-01 | 92.7% | 93.3% |
| 4505181 | 5069.1.3.10 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › ATP-synt_I | 0.58 | 51.0 | 4.53e-01 | 100.0% | 80.8% |
| 3928494 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 49.0 | 3.35e-01 | 98.8% | 28.6% |
| 4968618 | 611.6.1.0 ↗ | alpha bundles › N-cbl like › PT26-6P helical domain › PT26-6P helical domain | 0.57 | 40.0 | 3.81e-01 | 72.0% | 67.3% |
| 4373135 | 5001.1.1.6 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Bac_rhodopsin | 0.55 | 47.0 | 3.65e-01 | 100.0% | 100.0% |
| 3292018 | 6132.1.1.2 ↗ | alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › FragX_IP | 0.52 | 37.0 | 3.98e-01 | 76.8% | 96.9% |