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HQ225832.1__ADX42571.1__X__00051

Bact-Vir

HQ225832.1__ADX42571.1__X__00051

Identity

Accession:
HQ225832 ↗
Kingdom:
phage

Quality

89.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Tijeunavirus› Tetrasphaera_phage_TJE1

TaxID: 981335

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-54
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.80 52.0 4.28e-01 75.5% 39.3%
3rioA01 2.30.24.10 Mainly Beta › Roll › Transcription Regulation, Sacy; Chain A › CAT RNA-binding domain 0.77 56.0 5.16e-01 77.4% 89.7%
3qc2B00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.74 57.0 3.43e-01 84.9% 38.4%
4f0fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.73 55.0 4.56e-01 81.1% 95.7%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 50.0 5.25e-01 73.6% 93.6%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.69 51.0 3.21e-01 81.1% 23.6%
4dzoA02 3.30.457.60 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.68 46.0 4.15e-01 71.7% 53.2%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 45.0 4.60e-01 75.5% 80.8%
3v0aB03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 49.0 3.34e-01 88.7% 38.0%
3sb1A01 3.30.1370.140 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › HupH hydrogenase expression protein, C-terminal domain 0.62 45.0 3.80e-01 81.1% 57.6%
4c26A00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.62 46.0 4.36e-01 96.2% 66.7%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.61 49.0 4.14e-01 88.7% 52.8%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.61 43.0 3.30e-01 73.6% 39.2%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.60 43.0 3.88e-01 77.4% 67.5%
1wmiA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.60 43.0 3.79e-01 81.1% 58.0%
3s8zA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 51.0 3.18e-01 100.0% 78.2%
4g9mB00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 48.0 3.69e-01 100.0% 83.9%
5c3vA01 3.30.800.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta 0.58 42.0 3.09e-01 81.1% 95.8%
4oijA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 41.0 3.76e-01 81.1% 76.1%
1o9yC00 2.30.330.10 Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like 0.53 37.0 3.48e-01 77.4% 86.1%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 41.0 3.58e-01 90.6% 70.0%
4tpsA00 3.30.310.250 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA 0.53 40.0 2.97e-01 81.1% 30.0%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.51 36.0 2.91e-01 75.5% 78.1%
3dnsA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 42.0 3.33e-01 100.0% 90.8%
2wc7A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 38.0 3.48e-01 86.8% 88.6%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4431929 4100.1.1.4 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › UPF0150 0.84 56.0 5.20e-01 75.5% 56.9%
4959884 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.83 55.0 5.43e-01 75.5% 65.5%
3406803 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 50.0 4.54e-01 73.6% 71.4%
3230400 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 50.0 4.66e-01 73.6% 86.2%
3943751 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 51.0 4.74e-01 75.5% 66.2%
2393360 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 56.0 4.44e-01 98.1% 79.0%
5073723 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 57.0 4.50e-01 100.0% 79.0%
2410067 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.67 48.0 4.67e-01 79.2% 83.6%
5048098 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 55.0 4.31e-01 98.1% 77.6%
5052949 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 56.0 4.35e-01 98.1% 76.0%
1148074 3400.1.1.1 ↗ a+b complex topology › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Filo_VP24 0.65 49.0 3.21e-01 81.1% 62.2%
3992505 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.64 55.0 3.54e-01 98.1% 29.4%
3675633 902.1.1.0 ↗ few secondary structure elements › Amb V allergen › Amb V allergen › Amb V allergen 0.64 43.0 4.72e-01 73.6% 94.9%
3392175 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 48.0 3.09e-01 84.9% 33.7%
3684031 7512.1.1.1 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT 0.63 46.0 3.01e-01 81.1% 30.6%
5047213 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 51.0 4.04e-01 98.1% 75.8%
3602725 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.62 45.0 4.19e-01 81.1% 81.4%
5048945 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 51.0 4.01e-01 100.0% 59.2%
4951171 809.1.1.0 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.61 45.0 4.16e-01 81.1% 81.4%
None — 0.61 44.0 2.97e-01 81.1% 56.5%
4948218 243.6.1.12 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › PUA 0.60 45.0 4.02e-01 86.8% 81.2%
3992688 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.60 51.0 3.69e-01 100.0% 83.0%
4946840 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 48.0 3.94e-01 100.0% 67.0%
3923434 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 50.0 3.68e-01 96.2% 60.7%
4943586 243.6.1.12 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › PUA 0.58 42.0 3.80e-01 81.1% 80.0%
4928821 247.1.1.17 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › ODP 0.56 39.0 2.60e-01 77.4% 86.8%
3823427 331.4.1.2 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.52 44.0 3.43e-01 100.0% 55.2%
D2 high residues 62-131
PDB
Domain cluster: rep: SRR1747059_scaffold_22_prodigal-single.1__X__X__00131__D159-237
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4wriA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.66 52.0 3.90e-01 88.6% 74.3%
1uurA03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.64 49.0 4.62e-01 85.7% 83.0%
7rd0A01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.63 43.0 3.31e-01 85.7% 31.6%
2k7bA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.63 48.0 4.69e-01 82.9% 82.9%
1f4qA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.61 47.0 3.63e-01 85.7% 36.6%
2hpsA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 46.0 3.51e-01 85.7% 75.5%
2px0A01 1.20.120.1380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar FlhF biosynthesis protein, N domain 0.60 45.0 4.53e-01 84.3% 98.6%
5h0pA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 47.0 4.27e-01 91.4% 83.3%
1sxjA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.58 39.0 3.89e-01 71.4% 68.1%
3vkgA08 1.10.472.130 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain 0.57 43.0 3.41e-01 84.3% 66.3%
5hmpB02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 39.0 4.03e-01 91.4% 79.7%
1y1aA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 44.0 4.15e-01 90.0% 89.7%
5v89A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 42.0 3.98e-01 84.3% 73.9%
5a2gA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 40.0 2.49e-01 82.9% 35.1%
1bocA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 42.0 4.12e-01 88.6% 89.5%
1s1eA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 42.0 3.19e-01 88.6% 87.8%
1u0mA01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.52 39.0 2.88e-01 82.9% 85.6%
4lzjA02 1.10.8.1080 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 42.0 4.12e-01 92.9% 91.1%
3ledA01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 37.0 2.71e-01 78.6% 93.2%
8gtyA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.51 44.0 3.37e-01 100.0% 74.0%
4pzaB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.51 42.0 3.03e-01 94.3% 35.9%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3611215 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.67 53.0 5.05e-01 88.6% 100.0%
4027470 108.1.1.25 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_4 0.67 50.0 4.51e-01 80.0% 69.5%
4024510 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.65 49.0 4.42e-01 81.4% 66.0%
3924788 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.65 50.0 4.47e-01 84.3% 78.0%
1557040 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.64 50.0 4.62e-01 85.7% 80.6%
4030506 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.64 52.0 4.74e-01 91.4% 94.7%
3405290 4207.1.2.82 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › PF27645 0.63 49.0 4.19e-01 88.6% 57.6%
4172563 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.63 48.0 5.07e-01 82.9% 100.0%
4014099 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.63 50.0 4.61e-01 90.0% 87.4%
3634672 108.1.1.25 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_4 0.63 51.0 4.49e-01 92.9% 81.8%
4410191 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.62 46.0 4.55e-01 80.0% 80.0%
3623805 108.1.1.26 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.61 49.0 3.21e-01 88.6% 42.3%
4597196 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.61 50.0 3.52e-01 88.6% 44.9%
None — 0.60 49.0 4.41e-01 92.9% 93.0%
5007085 2004.1.1.76 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.59 49.0 3.12e-01 95.7% 18.7%
3931966 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.59 42.0 4.37e-01 77.1% 90.8%
4578423 7581.1.1.4 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_N 0.59 43.0 3.06e-01 78.6% 79.1%
3625547 3775.1.1.1 ↗ beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 0.59 46.0 2.85e-01 85.7% 16.7%
2817023 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.58 43.0 4.16e-01 84.3% 69.8%
3591225 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 46.0 4.15e-01 88.6% 73.0%
3715042 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 45.0 4.21e-01 90.0% 74.4%
3487351 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 41.0 4.40e-01 78.6% 100.0%
5000159 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.56 45.0 3.25e-01 88.6% 44.8%
4971241 4095.1.1.0 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain 0.56 47.0 3.37e-01 92.9% 87.8%
3910100 108.1.1.96 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.56 44.0 4.18e-01 91.4% 82.2%
3391942 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 43.0 3.73e-01 87.1% 57.4%
3772787 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 43.0 3.61e-01 88.6% 80.0%
3493536 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 36.0 3.11e-01 70.0% 40.9%
3704215 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 42.0 3.56e-01 92.9% 75.2%
1527773 601.21.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › FAD-dependent thiol oxidase › FAD-dependent thiol oxidase › Evr1_Alr,FAD_SOX 0.52 44.0 3.08e-01 100.0% 76.5%
3603735 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.50 40.0 3.23e-01 91.4% 48.7%
3492060 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.50 40.0 3.87e-01 97.1% 81.2%