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HQ268735.1__ADT64029.1__X__00022

Bact-Vir

HQ268735.1__ADT64029.1__X__00022

Identity

Accession:
HQ268735 ↗
Kingdom:
phage

Quality

84.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-68
PDB
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3t46A00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.86 57.0 5.57e-01 100.0% 62.7%
3gonA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.85 57.0 4.46e-01 100.0% 35.1%
4fymF00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.83 54.0 3.72e-01 95.6% 21.5%
1yzmA00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.80 50.0 5.78e-01 94.1% 93.5%
1z0jB00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.79 50.0 5.58e-01 95.6% 86.3%
2xzmO02 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.79 52.0 5.16e-01 97.1% 65.7%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.77 49.0 5.64e-01 95.6% 93.8%
1vmgA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.77 49.0 4.60e-01 95.6% 53.7%
5b1aC01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.76 55.0 5.52e-01 98.5% 75.0%
8amzS01 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.76 56.0 3.42e-01 77.9% 65.7%
4hb1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.76 48.0 5.76e-01 88.2% 100.0%
2oo2A00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.76 50.0 4.83e-01 100.0% 60.5%
4b6xA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 53.0 5.27e-01 98.5% 72.5%
2rklF00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.74 47.0 5.24e-01 92.6% 84.6%
1luwA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.74 51.0 5.29e-01 95.6% 76.6%
1a7eA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.73 47.0 3.95e-01 97.1% 38.1%
3fxdC00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.72 46.0 5.13e-01 98.5% 88.0%
2nr4A02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.72 46.0 4.94e-01 94.1% 77.6%
2wj9B00 3.30.70.3580 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Antirestriction protein 0.71 56.0 4.31e-01 83.8% 84.1%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.71 57.0 4.48e-01 86.8% 82.1%
3kk4A01 1.10.3990.20 Mainly Alpha › Orthogonal Bundle › Ribbon-helix-helix fold › protein bp1543 0.70 44.0 3.74e-01 79.4% 39.4%
3kwoA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.70 58.0 4.38e-01 88.2% 81.9%
1kfdA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.69 49.0 4.90e-01 94.1% 71.8%
3k7xA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.68 53.0 3.35e-01 83.8% 17.9%
4g09A03 1.20.5.1300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.66 44.0 4.85e-01 80.9% 85.5%
4e4eA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.66 51.0 5.04e-01 95.6% 78.9%
1kaeA03 1.20.5.1300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.66 45.0 4.94e-01 83.8% 87.3%
1cpyA02 1.10.287.410 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 51.0 5.02e-01 100.0% 80.6%
1gqeA01 1.20.58.410 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Release factor 0.64 59.0 4.88e-01 100.0% 81.4%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.64 50.0 3.70e-01 85.3% 65.2%
1yvwA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.63 50.0 4.58e-01 86.8% 67.4%
3k59A06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.62 42.0 4.82e-01 91.2% 100.0%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 52.0 4.47e-01 92.6% 58.5%
2pw9A01 4.10.80.30 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › DNA polymerase; domain 6 0.62 28.0 3.63e-01 94.1% 100.0%
1aueB00 1.20.120.150 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain 0.61 56.0 4.98e-01 100.0% 96.8%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 4.29e-01 88.2% 70.9%
3h95A02 4.10.80.100 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › 0.61 27.0 3.70e-01 82.4% 90.0%
2b9dA01 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 30.0 3.69e-01 89.7% 79.5%
5t1dB00 3.10.390.20 Alpha Beta › Roll › SAND domain › Viral glycoprotein L 0.60 47.0 4.22e-01 89.7% 59.6%
4aqsA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 43.0 3.00e-01 80.9% 83.7%
7uzsX02 3.90.260.10 Alpha Beta › Alpha-Beta Complex › Coagulation Factor XIII; Chain A, domain 2 › Transglutaminase-like 0.56 46.0 3.09e-01 94.1% 39.3%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 42.0 3.81e-01 83.8% 89.9%
1neiA00 3.30.160.220 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG 0.53 30.0 3.22e-01 70.6% 61.7%
4z1xA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 45.0 3.55e-01 95.6% 86.0%
2a2cA03 1.20.1440.340 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.53 41.0 3.24e-01 92.6% 41.3%
1f7uA02 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.52 45.0 3.73e-01 98.5% 60.8%
1iq0A03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.51 45.0 3.80e-01 100.0% 71.6%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.51 41.0 3.42e-01 91.2% 60.8%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5017114 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.85 53.0 3.91e-01 92.6% 26.9%
5007364 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.85 55.0 6.07e-01 95.6% 81.8%
4165434 192.6.1.1 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE 0.85 54.0 6.16e-01 94.1% 88.0%
5056430 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.84 53.0 5.30e-01 95.6% 62.9%
5025189 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.81 52.0 5.72e-01 98.5% 81.8%
3968962 604.9.1.29 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › DUF2339 0.80 57.0 4.00e-01 75.0% 72.5%
3943105 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.80 56.0 3.28e-01 98.5% 9.7%
5060285 109.4.1.5 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 0.79 49.0 3.32e-01 94.1% 18.0%
3738041 192.5.1.1 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 0.78 53.0 4.88e-01 97.1% 55.3%
5016327 605.1.1.2 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim 0.74 50.0 4.97e-01 97.1% 67.1%
3631038 5082.1.1.1 alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.73 61.0 4.18e-01 88.2% 66.2%
3971809 192.8.1.424 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › H-kinase_dim 0.72 48.0 5.21e-01 97.1% 85.5%
4784166 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.72 50.0 5.01e-01 98.5% 71.4%
4533078 5082.1.1.1 alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.72 60.0 4.17e-01 88.2% 69.5%
3934035 5001.1.1.44 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.71 55.0 3.59e-01 82.4% 65.7%
3499881 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.71 51.0 3.19e-01 94.1% 14.6%
4253651 3843.1.1.0 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.70 48.0 4.48e-01 97.1% 57.6%
3482807 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.69 60.0 5.15e-01 98.5% 60.2%
5012500 3843.1.1.6 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MrpF_PhaF 0.69 49.0 4.59e-01 98.5% 60.0%
3859098 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.65 53.0 3.36e-01 89.7% 44.6%
3929637 382.1.1.23 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › PF29371 0.65 54.0 4.41e-01 95.6% 63.4%
3933378 5001.1.1.60 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srx 0.64 51.0 3.51e-01 89.7% 55.6%
3296414 192.29.1.168 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF641 0.63 52.0 5.20e-01 98.5% 87.1%
5001620 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.62 54.0 4.72e-01 100.0% 77.1%
3941867 5082.1.1.1 alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.61 56.0 3.87e-01 98.5% 36.2%
3238943 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.61 48.0 3.10e-01 85.3% 63.7%
3934845 5001.1.1.66 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg 0.61 55.0 3.58e-01 100.0% 59.3%
3930248 5001.1.1.44 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.60 55.0 3.48e-01 100.0% 54.1%
5026144 1075.1.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.59 47.0 3.32e-01 89.7% 60.9%
3921728 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.59 53.0 4.44e-01 100.0% 71.3%
2095479 1170.1.2.3 beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) › Phage_glycop_gL 0.59 47.0 4.11e-01 89.7% 58.3%
3929773 5001.1.1.44 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.59 53.0 3.43e-01 100.0% 57.6%
3266842 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.58 50.0 4.12e-01 95.6% 54.4%
3926991 5001.1.1.66 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg 0.58 51.0 3.30e-01 100.0% 53.0%
5079107 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 51.0 4.14e-01 100.0% 86.2%
3518103 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.57 46.0 2.97e-01 89.7% 40.3%
3252307 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.57 46.0 3.39e-01 88.2% 38.9%
3270364 3209.1.1.1 a+b two layers › RPL28 › RPL28 › RPL28 › Ribosomal_L28e 0.56 44.0 3.69e-01 88.2% 52.8%
3349141 375.1.1.182 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7086 0.55 45.0 3.76e-01 98.5% 97.1%
4355183 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.55 44.0 3.44e-01 88.2% 43.9%
3369564 130.1.1.39 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › DUF7086 0.54 44.0 3.67e-01 98.5% 97.1%
4089556 7575.1.1.6 a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C80 0.54 41.0 2.75e-01 85.3% 81.7%
3474147 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.53 36.0 2.23e-01 100.0% 10.8%
3491418 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.53 46.0 4.49e-01 98.5% 98.7%
3827046 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.53 47.0 4.28e-01 100.0% 80.0%
3214509 2006.1.6.39 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Mat89Bb 0.52 47.0 3.13e-01 100.0% 69.8%
5001282 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 46.0 3.57e-01 98.5% 82.1%
3740109 221.1.1.88 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › CLU_N 0.51 45.0 4.26e-01 100.0% 87.1%
4013484 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.51 44.0 3.14e-01 95.6% 42.9%
184719 3514.1.1.1 a+b two layers › uncharacterized protein PA1076 › uncharacterized protein PA1076 › uncharacterized protein PA1076 › DUF5064 0.51 41.0 3.42e-01 91.2% 60.8%
3326759 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.51 41.0 4.04e-01 91.2% 89.3%
D2 medium residues 69-125
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3besR03 6.10.140.1480 Special › Helix non-globular › Helix Hairpins › 0.90 70.0 7.09e-01 84.2% 83.9%
1tmxB00 2.60.130.10 Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase 0.83 65.0 4.04e-01 84.2% 16.7%
4jvtA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.79 54.0 6.06e-01 73.7% 100.0%
4jylA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.75 50.0 5.25e-01 75.4% 79.6%
1m5iA00 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.75 56.0 4.59e-01 80.7% 52.4%
1zs3A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.75 57.0 4.03e-01 84.2% 27.5%
3x0uB01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.74 62.0 4.06e-01 93.0% 25.1%
1j30A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.74 58.0 4.30e-01 84.2% 35.5%
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 56.0 4.44e-01 80.7% 55.8%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 65.0 5.45e-01 100.0% 74.0%
4di1C02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.73 50.0 5.50e-01 94.7% 100.0%
2rbdA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.73 55.0 4.07e-01 84.2% 31.3%
2f93B00 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.72 57.0 5.91e-01 89.5% 100.0%
4hzuS00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.72 62.0 4.53e-01 100.0% 40.2%
1st6A03 1.20.120.810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vinculin, Vh2 four-helix bundle 0.72 60.0 4.07e-01 98.2% 24.9%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 55.0 4.85e-01 82.5% 67.9%
5z7rA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.71 48.0 5.01e-01 75.4% 78.8%
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.71 58.0 5.00e-01 87.7% 65.1%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.71 58.0 5.24e-01 89.5% 66.2%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 48.0 4.21e-01 73.7% 48.2%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.70 56.0 5.68e-01 98.2% 94.7%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.70 58.0 4.25e-01 89.5% 40.0%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.70 60.0 4.60e-01 96.5% 59.4%
1qguB04 1.20.89.10 Mainly Alpha › Up-down Bundle › Nitrogenase Molybdenum-iron Protein, subunit B; domain 4 › Nitrogenase Molybdenum-iron Protein, subunit B, domain 4 0.70 47.0 4.14e-01 70.2% 83.1%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 57.0 5.26e-01 87.7% 91.5%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 58.0 5.68e-01 89.5% 85.5%
2qqyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.69 60.0 4.48e-01 96.5% 76.1%
5h5mA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.68 57.0 4.46e-01 96.5% 100.0%
3ermB00 1.10.10.710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like 0.68 51.0 4.96e-01 82.5% 71.9%
2mpkA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.68 55.0 5.18e-01 94.7% 73.0%
4a17U01 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 56.0 5.01e-01 89.5% 67.5%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.67 54.0 4.69e-01 89.5% 77.8%
3rlfF01 1.20.58.370 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › MalF N-terminal region-like 0.67 57.0 5.02e-01 98.2% 65.1%
3e0sA00 1.40.20.10 Mainly Alpha › Alpha solenoid › CHAD domain › CHAD domain 0.67 57.0 3.64e-01 100.0% 34.5%
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.67 53.0 4.86e-01 96.5% 65.4%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 52.0 5.19e-01 91.2% 82.8%
1n5uA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.66 53.0 4.45e-01 93.0% 50.5%
4b6xA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 54.0 5.09e-01 89.5% 88.4%
1z0jB00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.66 51.0 5.36e-01 93.0% 92.2%
1jxzC02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.65 44.0 4.42e-01 80.7% 68.3%
4fzwA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.65 53.0 5.29e-01 89.5% 96.6%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 51.0 3.59e-01 89.5% 26.9%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.64 51.0 4.81e-01 84.2% 75.8%
3zgxA02 6.10.140.1720 Special › Helix non-globular › Helix Hairpins › 0.64 55.0 4.70e-01 96.5% 59.3%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.64 52.0 4.93e-01 87.7% 77.6%
3nymA00 6.10.290.10 Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.63 55.0 4.29e-01 98.2% 81.5%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 54.0 4.95e-01 96.5% 77.6%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 55.0 3.65e-01 98.2% 35.0%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.62 50.0 4.50e-01 87.7% 64.5%
3ezuA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 53.0 3.75e-01 100.0% 35.2%
3i1aA03 1.20.58.840 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 50.0 3.92e-01 94.7% 69.8%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3879791 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.92 82.0 5.30e-01 96.5% 24.4%
3909706 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.91 83.0 7.12e-01 98.2% 68.2%
3406162 4006.1.1.13 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › DUF842 0.90 80.0 6.07e-01 100.0% 44.0%
197868 614.1.1.0 alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain 0.90 70.0 7.37e-01 84.2% 92.2%
4075707 3711.1.1.0 alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.89 81.0 6.68e-01 98.2% 61.1%
3265419 1128.1.1.0 alpha bundles › LYR protein › LYR protein › LYR protein 0.87 71.0 6.27e-01 93.0% 62.5%
3563871 603.1.1.121 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF30821 0.81 71.0 5.62e-01 98.2% 50.4%
5039392 1008.1.1.0 alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain 0.80 68.0 5.57e-01 96.5% 52.4%
3412881 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.77 65.0 5.90e-01 96.5% 68.8%
4094168 547.1.1.1 alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.77 67.0 5.60e-01 100.0% 70.0%
5066732 3646.1.1.1 alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ 0.76 66.0 4.30e-01 96.5% 24.7%
3963355 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.76 60.0 5.42e-01 84.2% 65.3%
5072135 2498.1.1.10 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.75 64.0 4.43e-01 96.5% 29.2%
4519046 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.74 64.0 4.86e-01 96.5% 43.7%
3784740 3712.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 0.74 57.0 5.19e-01 82.5% 68.0%
4648753 605.1.1.278 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Attractin 0.74 61.0 6.02e-01 91.2% 95.0%
4831662 5043.1.1.1 extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › Htr2 0.73 60.0 5.80e-01 96.5% 83.3%
3600869 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.72 61.0 4.82e-01 98.2% 46.1%
3989094 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.72 56.0 5.27e-01 87.7% 68.6%
4172979 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.72 63.0 5.26e-01 100.0% 63.0%
3592587 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.71 55.0 4.21e-01 82.5% 71.2%
3973864 6026.1.1.2 alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › GlpM 0.71 60.0 4.98e-01 100.0% 67.0%
185221 3502.1.1.1 alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG 0.70 53.0 5.03e-01 82.5% 68.7%
3487203 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.70 59.0 5.14e-01 91.2% 83.5%
5041482 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.70 57.0 4.83e-01 89.5% 55.8%
3387239 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.70 57.0 4.47e-01 89.5% 43.3%
3518379 3502.1.1.1 alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG 0.70 49.0 5.02e-01 77.2% 76.4%
3417201 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.69 58.0 4.14e-01 94.7% 31.4%
3186617 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.69 58.0 3.65e-01 96.5% 19.2%
3963152 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.68 56.0 3.53e-01 100.0% 16.2%
5007978 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.66 56.0 4.29e-01 96.5% 45.9%
4449117 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.66 58.0 5.21e-01 98.2% 71.2%
3613914 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.64 57.0 5.17e-01 96.5% 74.7%
4674 192.7.1.1 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB 0.64 57.0 5.45e-01 98.2% 100.0%
3448294 3826.1.1.33 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › eIF-4B 0.63 58.0 4.98e-01 98.2% 77.6%
3704 601.1.1.1 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.63 50.0 4.69e-01 87.7% 72.2%
3491182 109.1.1.0 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.61 50.0 3.72e-01 91.2% 37.6%