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HQ316579.1__AGG57780.1__VPBG_00007__00007

Bact-Vir

HQ316579.1__AGG57780.1__VPBG_00007__00007

Identity

Accession:
HQ316579 ↗
Kingdom:
phage

Quality

66.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-102
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2js9A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.72 50.0 5.10e-01 72.3% 75.3%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.71 52.0 5.01e-01 75.9% 83.7%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.69 60.0 5.57e-01 100.0% 83.3%
2wy4A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.68 50.0 4.15e-01 75.9% 89.2%
2wauA01 1.20.1310.20 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain 0.68 62.0 5.01e-01 100.0% 66.5%
2wpvE00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.64 56.0 3.94e-01 100.0% 42.5%
1t5oA01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.62 54.0 4.58e-01 97.6% 59.6%
1sgmA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 54.0 4.25e-01 100.0% 54.3%
6hftA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 41.0 3.59e-01 97.6% 44.9%
2oerA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 53.0 4.22e-01 100.0% 63.7%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.60 48.0 3.92e-01 92.8% 46.8%
1ashA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 52.0 4.37e-01 100.0% 58.5%
2mx8A01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.59 49.0 4.50e-01 100.0% 69.0%
1urvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 51.0 4.24e-01 100.0% 56.5%
1hbgA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 50.0 4.25e-01 100.0% 63.9%
4gyoA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 43.0 3.24e-01 94.0% 30.0%
2d2mD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 49.0 4.19e-01 100.0% 65.5%
1aisB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 37.0 3.56e-01 72.3% 55.6%
2hjmA01 1.20.120.460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like 0.57 40.0 4.00e-01 78.3% 70.9%
5ojcA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 49.0 4.13e-01 100.0% 54.5%
1x3kA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 47.0 4.02e-01 100.0% 53.7%
3fflA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 42.0 3.67e-01 98.8% 52.4%
2e9fB01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.56 36.0 3.50e-01 77.1% 57.3%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 37.0 3.53e-01 71.1% 57.7%
1nktA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 47.0 3.31e-01 96.4% 32.3%
4r42A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 44.0 3.39e-01 85.5% 80.7%
2ib0A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 43.0 3.75e-01 86.7% 90.4%
1a00B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 48.0 4.05e-01 100.0% 76.7%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.55 44.0 4.09e-01 88.0% 84.0%
2jbwA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.55 46.0 4.30e-01 94.0% 83.5%
3wctD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 47.0 3.99e-01 100.0% 57.1%
2hfiA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.55 47.0 4.17e-01 95.2% 70.7%
2ifuD00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 48.0 3.36e-01 98.8% 30.4%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 48.0 4.08e-01 100.0% 75.0%
1wgwA00 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.54 42.0 3.99e-01 84.3% 74.7%
2a9uA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.54 43.0 3.75e-01 85.5% 60.3%
8g0lB01 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 46.0 2.99e-01 94.0% 23.9%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 46.0 3.93e-01 97.6% 78.7%
1x9fC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 44.0 3.75e-01 100.0% 53.7%
3u3iA02 1.20.58.1110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 44.0 4.17e-01 98.8% 83.3%
1fx8A00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.53 45.0 3.32e-01 100.0% 87.8%
3cx3B01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.53 41.0 3.39e-01 84.3% 92.2%
4dmvA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 39.0 3.93e-01 89.2% 78.8%
1tu9A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 44.0 3.91e-01 100.0% 68.7%
4hwhE00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.52 41.0 4.08e-01 86.7% 89.8%
1y4cA03 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.52 42.0 3.85e-01 89.2% 85.0%
2fuqA01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.52 44.0 3.04e-01 98.8% 33.9%
3n71A03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 41.0 3.07e-01 98.8% 33.3%
6grjB01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.52 41.0 2.82e-01 88.0% 78.8%
3p4tA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.52 43.0 3.56e-01 91.6% 74.0%
1rz4A01 1.25.40.250 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat; domain 1 0.51 41.0 3.72e-01 98.8% 62.5%
1aueB00 1.20.120.150 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain 0.50 38.0 3.73e-01 83.1% 93.6%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4941415 1076.1.1.0 alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related 0.75 68.0 5.56e-01 100.0% 81.3%
5055626 1076.1.1.0 alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related 0.72 63.0 5.24e-01 100.0% 70.7%
4456702 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.67 51.0 4.69e-01 81.9% 64.5%
3737103 109.4.1.27 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › W2 0.67 55.0 4.49e-01 100.0% 46.7%
4466880 604.39.1.0 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.66 55.0 4.47e-01 100.0% 48.8%
5030460 1.1.2.23 beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_cat 0.65 57.0 3.57e-01 100.0% 22.4%
4223248 621.1.1.3 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB 0.64 51.0 4.64e-01 86.7% 89.1%
3232893 601.1.1.73 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF19 0.62 53.0 4.39e-01 100.0% 90.9%
2080227 6108.1.1.1 alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Dynamin_M,GED 0.61 45.0 3.73e-01 81.9% 73.3%
3933181 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 52.0 4.04e-01 100.0% 75.1%
1148717 109.4.1.210 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.60 39.0 4.08e-01 94.0% 72.0%
4993683 3896.1.2.0 alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-archaeol synthase 0.60 51.0 4.16e-01 98.8% 84.5%
3852805 109.4.1.95 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 0.60 42.0 3.53e-01 98.8% 42.7%
4889682 11.2.1.20 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › FerB 0.60 46.0 3.81e-01 84.3% 65.4%
5007775 1075.5.1.8 alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt_3 0.59 45.0 3.24e-01 83.1% 35.4%
3894003 601.1.3.9 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › A middle domain of Talin 1 › TRC8_N 0.58 48.0 4.11e-01 88.0% 68.5%
4211428 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.58 50.0 4.07e-01 100.0% 50.6%
3215729 193.1.1.27 alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CCDC93_N 0.58 40.0 3.67e-01 90.4% 54.5%
3914038 109.4.1.369 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAPC1 0.58 50.0 4.29e-01 100.0% 65.0%
3236861 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.58 49.0 4.10e-01 100.0% 58.1%
3236728 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.57 49.0 4.04e-01 100.0% 52.7%
3972200 6155.2.1.1 alpha duplicates or obligate multimers › TOG superfamily › PnuC › PnuC › NMN_transporter 0.57 46.0 3.63e-01 90.4% 53.5%
3935113 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.57 48.0 3.95e-01 100.0% 67.6%
3995656 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.56 47.0 3.95e-01 100.0% 59.4%
3585743 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.56 48.0 3.94e-01 100.0% 56.4%
3629933 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.55 47.0 3.85e-01 100.0% 53.1%
3831265 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 45.0 4.39e-01 91.6% 86.3%
50204 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.55 48.0 4.12e-01 100.0% 75.2%
3944793 601.19.1.41 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › YicC-like_C 0.54 43.0 3.51e-01 85.5% 46.5%
4009669 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.54 41.0 3.29e-01 90.4% 37.8%
4350358 109.4.1.179 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nro1 0.54 47.0 3.02e-01 98.8% 31.9%
3727675 109.4.1.681 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 0.54 47.0 2.94e-01 98.8% 19.0%
3468740 109.3.1.188 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF28568 0.53 47.0 3.64e-01 100.0% 97.4%
3399161 109.25.1.0 alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A 0.53 46.0 4.11e-01 97.6% 68.3%
3273868 109.4.1.192 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.53 44.0 3.64e-01 92.8% 50.0%
3334664 109.4.1.1304 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_10, TPR_12 0.53 44.0 2.88e-01 97.6% 18.8%
4029195 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.53 43.0 3.07e-01 88.0% 52.4%
3724504 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 44.0 3.44e-01 98.8% 40.0%
4963777 604.12.1.137 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF373 0.53 43.0 3.64e-01 94.0% 91.3%
3232756 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.53 45.0 4.53e-01 98.8% 98.8%
3296 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.53 44.0 3.91e-01 100.0% 68.7%
3752900 109.4.1.198 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.52 40.0 3.31e-01 97.6% 42.4%
3684562 109.4.1.480 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TMEM214 0.52 47.0 3.43e-01 100.0% 48.9%
3828970 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.52 42.0 4.06e-01 88.0% 84.2%
3403082 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 43.0 3.32e-01 92.8% 38.9%
3341807 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.52 41.0 3.78e-01 86.7% 71.8%
3276423 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 42.0 3.42e-01 94.0% 63.4%
3221654 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.51 43.0 3.58e-01 100.0% 53.3%
3590053 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.51 38.0 3.87e-01 92.8% 80.0%
3560836 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.50 45.0 3.44e-01 100.0% 66.7%