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HQ316579.1__AGG57854.1__VPBG_00082__00081

Bact-Vir

HQ316579.1__AGG57854.1__VPBG_00082__00081

Identity

Accession:
HQ316579 ↗
Kingdom:
phage

Quality

72.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_helene_12B3

TaxID: 573173

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-91
PDB
D2 high residues 99-147
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21817.4 best CapR 25.7 1.60e-05 100.0% 76.1%
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 53.0 5.39e-01 100.0% 91.5%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 43.0 4.06e-01 89.8% 54.8%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 55.0 4.84e-01 100.0% 81.1%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 54.0 4.77e-01 100.0% 83.8%
1xn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 43.0 3.17e-01 73.5% 55.8%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 51.0 4.76e-01 100.0% 73.0%
3h7jA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 47.0 3.74e-01 87.8% 84.5%
4wsiA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 47.0 4.37e-01 91.8% 93.9%
1a1xA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.59 46.0 3.66e-01 89.8% 80.2%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 49.0 4.70e-01 98.0% 93.2%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 49.0 4.64e-01 98.0% 88.3%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.58 48.0 3.40e-01 95.9% 30.8%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 48.0 4.30e-01 100.0% 76.0%
3e19B01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 50.0 4.62e-01 100.0% 93.8%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 48.0 4.78e-01 100.0% 94.3%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 48.0 4.60e-01 100.0% 98.3%
3dghA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 47.0 3.64e-01 100.0% 92.7%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 45.0 3.17e-01 89.8% 30.4%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 46.0 4.36e-01 98.0% 87.1%
4paaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 47.0 3.04e-01 98.0% 54.7%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 46.0 4.36e-01 100.0% 92.2%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 46.0 4.46e-01 100.0% 96.6%
2qyvA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.56 40.0 2.65e-01 79.6% 82.0%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 46.0 4.21e-01 98.0% 77.9%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 3.55e-01 100.0% 65.3%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 43.0 2.70e-01 95.9% 21.6%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 45.0 4.30e-01 100.0% 93.4%
4g56D00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 43.0 2.73e-01 93.9% 20.1%
7bysA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 43.0 2.74e-01 95.9% 33.1%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 47.0 4.60e-01 100.0% 98.2%
6eufA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 43.0 2.73e-01 98.0% 25.3%
2wozA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.53 43.0 2.74e-01 100.0% 34.2%
2psbA00 3.50.90.10 Alpha Beta › 3-Layer(bba) Sandwich › YerB-like fold › YerB-like 0.53 42.0 2.73e-01 100.0% 17.6%
1x99A00 2.60.270.20 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin 0.52 42.0 3.17e-01 100.0% 48.3%
1jt8A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 40.0 3.27e-01 89.8% 64.7%
2eyzA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 40.0 3.35e-01 85.7% 54.9%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.52 39.0 3.44e-01 89.8% 58.3%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.51 37.0 2.68e-01 83.7% 65.7%
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 39.0 3.29e-01 89.8% 97.9%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3810217 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 62.0 6.22e-01 100.0% 90.0%
3978624 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.73 57.0 4.21e-01 100.0% 33.1%
4516378 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.71 54.0 4.81e-01 100.0% 58.6%
4665407 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.68 52.0 5.18e-01 100.0% 82.0%
4024913 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 50.0 4.63e-01 100.0% 61.5%
3902975 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 58.0 5.51e-01 100.0% 93.3%
5071634 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.66 54.0 3.32e-01 95.9% 70.5%
3200493 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.66 52.0 5.10e-01 98.0% 80.0%
4014906 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 52.0 4.45e-01 95.9% 53.8%
4295947 3844.1.1.1 ↗ a+b two layers › hydrogenase expression protein-like › hydrogenase expression protein-like › hydrogenase expression protein › HupH_C 0.65 51.0 4.08e-01 100.0% 40.9%
4269256 4.1.1.245 ↗ beta barrels › SH3 › SH3 › SH3 › SspH 0.65 49.0 4.64e-01 100.0% 68.3%
3921563 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 55.0 4.73e-01 100.0% 70.0%
3463181 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 50.0 4.57e-01 100.0% 64.3%
3614414 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 48.0 4.64e-01 100.0% 74.1%
3744277 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.62 50.0 4.99e-01 100.0% 92.0%
3997946 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.62 50.0 3.57e-01 100.0% 50.0%
3365104 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.62 53.0 4.87e-01 100.0% 86.2%
3601907 5.1.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.61 43.0 2.95e-01 87.8% 20.7%
3465186 5.1.8.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.60 50.0 3.74e-01 95.9% 71.5%
3896336 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.60 51.0 4.64e-01 100.0% 80.0%
3786978 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 50.0 4.61e-01 100.0% 95.7%
3269927 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.59 48.0 3.92e-01 100.0% 71.3%
3389935 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.59 47.0 4.02e-01 95.9% 60.0%
3242587 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.59 47.0 3.94e-01 95.9% 61.1%
3283507 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.59 43.0 3.69e-01 93.9% 45.6%
3416404 5.1.4.240 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MRJP 0.58 47.0 2.87e-01 93.9% 24.4%
3947081 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.58 49.0 4.58e-01 100.0% 84.4%
5014776 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 49.0 4.26e-01 100.0% 77.5%
3480321 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 42.0 3.75e-01 81.6% 66.2%
3512419 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.57 49.0 4.14e-01 100.0% 68.2%
3727070 206.1.1.15 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Fructosamin_kin 0.57 40.0 2.65e-01 79.6% 27.7%
3170649 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 49.0 4.14e-01 100.0% 84.7%
3782313 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 47.0 4.23e-01 100.0% 81.3%
3600486 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 49.0 3.91e-01 100.0% 55.0%
3925471 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 40.0 3.89e-01 91.8% 66.7%
3482680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 47.0 4.37e-01 100.0% 90.8%
3593811 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 46.0 3.57e-01 100.0% 72.0%
3786196 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 47.0 3.11e-01 100.0% 39.5%
3222195 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 47.0 4.37e-01 100.0% 86.2%
3231704 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 45.0 4.23e-01 98.0% 84.6%
3275623 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 46.0 3.97e-01 100.0% 65.9%
3225123 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 41.0 4.22e-01 83.7% 93.3%
3417443 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 46.0 4.22e-01 98.0% 76.8%
3736411 4.1.1.246 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.55 45.0 3.91e-01 100.0% 69.4%
1227254 5.1.2.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.55 44.0 2.76e-01 95.9% 27.4%
3325566 5.1.2.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.55 43.0 2.70e-01 95.9% 33.8%
3306595 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.55 48.0 3.26e-01 98.0% 93.7%
5078626 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.55 46.0 4.11e-01 100.0% 81.1%
2409445 5.1.2.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.54 43.0 2.72e-01 98.0% 24.5%
3289783 11.1.1.600 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › RskA_C 0.53 45.0 3.62e-01 100.0% 90.5%
3366511 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.53 44.0 4.11e-01 98.0% 80.0%
3979006 77.1.1.15 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › RHS_repeat, DUF6531, TEN_YD-shell 0.53 37.0 2.20e-01 75.5% 12.3%
4248250 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.53 45.0 3.09e-01 98.0% 96.2%
136262 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.53 43.0 2.74e-01 100.0% 34.2%
2095 4976.1.1.1 ↗ beta sandwiches › C-terminal domain in YerB-like proteins › C-terminal domain in YerB-like proteins › C-terminal domain in YerB-like proteins › DUF3048_C 0.53 42.0 3.29e-01 100.0% 86.9%
5014812 2004.1.1.95 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF257 0.52 42.0 2.82e-01 100.0% 84.8%
3620138 3246.1.1.4 ↗ few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › ADAMTS_CR_3 0.52 40.0 3.33e-01 91.8% 51.0%
4253165 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.52 40.0 2.95e-01 87.8% 37.1%
3517016 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 40.0 2.53e-01 93.9% 78.9%
3620222 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 41.0 3.25e-01 100.0% 70.0%
D3 high residues 162-230
PDB
Domain cluster: rep: MW824372.1__QZI87006.1__MYOV056v2_p0233__00232__D284-352
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF05265.21 best DUF723 33.1 8.20e-08 87.0% 60.3%
PF21817.4 CapR 50.3 3.20e-13 85.5% 100.0%
D4 high residues 241-344
PDB
Domain cluster: rep: ON014753.1__UQS94880.1__Pam1_60__00060__D11-130_138-150
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dgpA00 3.30.70.2610 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 39.0 4.90e-01 78.8% 88.7%
1x5aA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 37.0 3.92e-01 100.0% 59.3%
3h2dB00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.61 44.0 3.88e-01 76.0% 74.0%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.60 33.0 3.76e-01 99.0% 72.4%
4mo0A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.59 42.0 4.69e-01 97.1% 98.7%
2re1A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 39.0 4.44e-01 87.5% 95.9%
1a7jA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 45.0 3.21e-01 92.3% 30.1%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 32.0 3.54e-01 100.0% 67.1%
1konA02 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.56 39.0 4.20e-01 99.0% 85.6%
2dt9A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 39.0 4.36e-01 87.5% 96.2%
3s1tA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 39.0 4.32e-01 87.5% 96.2%
5d4nC00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 41.0 4.24e-01 89.4% 83.7%
2hp7A00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.54 39.0 3.36e-01 77.9% 65.9%
2cdqA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 40.0 4.37e-01 93.3% 100.0%
2fq3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 32.0 3.51e-01 81.7% 72.9%
1wkbA02 3.90.740.10 Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.53 37.0 2.89e-01 72.1% 78.9%
2fipA00 3.30.70.3560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phi-29-like late genes activator, P4 0.53 40.0 3.94e-01 100.0% 72.2%
1stzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 34.0 3.72e-01 79.8% 81.2%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 39.0 4.20e-01 88.5% 92.2%
4aqcB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 35.0 3.71e-01 74.0% 76.0%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.70e-01 79.8% 75.2%
6cngA02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.51 21.0 3.22e-01 94.2% 100.0%
4mz0B05 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.51 30.0 3.58e-01 90.4% 91.0%
2czrA02 3.90.79.30 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › TBP-interacting protein, C-terminal domain 0.50 34.0 3.25e-01 74.0% 59.2%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3666940 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.77 52.0 5.00e-01 72.1% 60.8%
3698242 821.1.1.10 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › MUG113 0.74 67.0 6.31e-01 96.2% 83.7%
3363261 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.71 64.0 5.88e-01 99.0% 93.3%
3182508 4340.1.1.0 ↗ a+b complex topology › TFB5-related › TFB5-related › TFB5-related 0.68 37.0 4.84e-01 77.9% 100.0%
3287540 304.56.1.5 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › PaaX_M 0.64 38.0 4.25e-01 88.5% 76.2%
3284116 304.56.1.5 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › PaaX_M 0.60 36.0 4.26e-01 87.5% 88.6%
5059796 4326.1.1.0 ↗ a+b two layers › ERH-like › ERH-like › ERH-like 0.60 34.0 3.97e-01 99.0% 81.2%
4323104 304.22.1.0 ↗ a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain 0.60 35.0 4.37e-01 87.5% 100.0%
3589438 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.59 33.0 4.10e-01 86.5% 93.3%
1209812 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.58 39.0 4.22e-01 89.4% 83.0%
3596697 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 43.0 4.22e-01 88.5% 75.5%
3690781 304.48.1.11 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.55 41.0 4.25e-01 83.7% 84.2%
5029667 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.55 35.0 3.98e-01 87.5% 94.3%
3226738 3016.1.1.21 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › PDXDC1-like_cen 0.54 44.0 3.81e-01 86.5% 93.1%
3515878 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.54 34.0 3.80e-01 81.7% 85.3%
2507397 2010.1.1.1 ↗ a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.54 45.0 3.92e-01 89.4% 94.2%
3216595 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.54 35.0 3.74e-01 88.5% 75.6%
3637444 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.53 44.0 3.35e-01 91.3% 71.0%
3989816 4018.1.1.2 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.53 37.0 3.22e-01 100.0% 49.3%
1937178 2010.1.1.1 ↗ a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.53 43.0 3.81e-01 89.4% 92.9%
5035105 7575.1.1.4 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C11 0.53 46.0 3.25e-01 100.0% 85.1%
4972735 7575.1.1.4 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C11 0.52 46.0 3.20e-01 100.0% 83.8%
3737722 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.51 36.0 3.58e-01 74.0% 88.2%
4950203 331.4.1.35 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › PF27341 0.50 41.0 3.22e-01 90.4% 90.6%
4782943 7575.1.1.4 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C11 0.50 40.0 3.15e-01 89.4% 77.7%