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HQ316579.1__AGG57917.1__VPBG_00145__00144

Bact-Vir

HQ316579.1__AGG57917.1__VPBG_00145__00144

Identity

Accession:
HQ316579 ↗
Kingdom:
phage

Quality

91.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_helene_12B3

TaxID: 573173

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-69
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.70 53.0 5.17e-01 81.0% 100.0%
2d9rA00 2.40.30.100 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › AF2212/PG0164-like 0.70 54.0 4.90e-01 84.1% 100.0%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.67 50.0 5.09e-01 82.5% 100.0%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.66 46.0 3.62e-01 74.6% 67.4%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.64 49.0 4.16e-01 85.7% 77.5%
1g7sA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 48.0 4.15e-01 85.7% 86.1%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.63 48.0 4.39e-01 87.3% 67.0%
1yloE02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.62 46.0 4.30e-01 82.5% 100.0%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 44.0 3.93e-01 76.2% 78.7%
7syvx01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 49.0 3.89e-01 88.9% 71.5%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 4.00e-01 74.6% 78.3%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.54e-01 81.0% 100.0%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.61 44.0 3.50e-01 77.8% 83.5%
3mcaA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 44.0 3.78e-01 77.8% 79.4%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.60 46.0 4.02e-01 87.3% 82.7%
2f1lA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.60 45.0 4.14e-01 85.7% 96.6%
4ga6A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.60 45.0 4.15e-01 82.5% 100.0%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.60 46.0 3.98e-01 85.7% 89.2%
5h7jA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 43.0 3.70e-01 79.4% 83.3%
5os9A00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.59 45.0 3.86e-01 87.3% 87.8%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 45.0 4.01e-01 84.1% 79.3%
8b6zA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 41.0 3.87e-01 76.2% 100.0%
3ef2A02 3.30.460.70 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.59 43.0 3.45e-01 81.0% 91.3%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 4.19e-01 76.2% 100.0%
1h0hA04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.58 43.0 3.19e-01 81.0% 74.4%
2hcjB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 43.0 3.86e-01 82.5% 93.6%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 44.0 3.81e-01 84.1% 73.8%
5hk0B00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 3.80e-01 87.3% 84.1%
1kw3B02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 42.0 3.19e-01 81.0% 74.0%
7plsA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 42.0 3.78e-01 84.1% 79.6%
4k8wA00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.56 49.0 4.02e-01 100.0% 91.5%
1ub4A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 3.79e-01 87.3% 82.5%
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.54 46.0 3.84e-01 100.0% 73.1%
1jheA00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.53 47.0 3.80e-01 100.0% 50.8%
5k3xA02 2.60.40.650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 3.62e-01 92.1% 72.6%
4kx7A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 38.0 3.58e-01 81.0% 91.7%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 39.0 3.78e-01 82.5% 90.7%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.52 44.0 3.73e-01 100.0% 65.5%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 3.31e-01 92.1% 87.1%
2xtsA02 2.60.40.650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.33e-01 92.1% 65.4%
1olrA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.51 42.0 2.97e-01 96.8% 64.1%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.74e-01 92.1% 96.6%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
146935 3158.1.1.1 ↗ beta barrels › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › DUF5348 0.70 54.0 5.24e-01 82.5% 100.0%
4044269 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.66 49.0 4.78e-01 81.0% 97.1%
2488620 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 47.0 4.90e-01 77.8% 100.0%
4953657 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 53.0 4.65e-01 88.9% 96.8%
5029405 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.65 44.0 4.65e-01 71.4% 100.0%
4241417 219.1.1.21 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C58 0.64 50.0 3.39e-01 85.7% 41.3%
3928362 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.63 45.0 3.93e-01 76.2% 75.5%
5018624 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 47.0 4.38e-01 84.1% 97.6%
5079674 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.63 48.0 4.59e-01 84.1% 97.3%
4071075 1.1.8.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.62 43.0 3.74e-01 74.6% 70.5%
3936469 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.60e-01 93.7% 74.4%
5024153 1.1.8.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › aSelB_III 0.62 45.0 3.93e-01 79.4% 75.0%
4890601 1.1.7.93 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D3, GTP_EFTU_D2 0.62 45.0 3.89e-01 77.8% 70.7%
4988427 2003.1.5.26 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_28 0.61 45.0 2.86e-01 81.0% 55.5%
3842363 1.1.5.76 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.61 49.0 4.21e-01 93.7% 84.5%
4441313 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 48.0 4.33e-01 88.9% 93.3%
4158157 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.61 44.0 4.45e-01 79.4% 100.0%
3381754 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.60 46.0 3.84e-01 85.7% 90.8%
3712219 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.60 44.0 4.37e-01 77.8% 92.3%
608 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.60 46.0 4.02e-01 87.3% 82.7%
3770803 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.60 49.0 4.22e-01 96.8% 87.3%
3698630 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.60 46.0 3.90e-01 84.1% 76.2%
5023371 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 48.0 4.28e-01 93.7% 95.8%
3512272 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 48.0 4.60e-01 92.1% 100.0%
3612184 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 43.0 4.41e-01 77.8% 93.3%
5040464 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 44.0 3.95e-01 84.1% 98.9%
4108526 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.59 43.0 3.88e-01 82.5% 91.6%
3449268 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 46.0 4.19e-01 87.3% 100.0%
139950 4.1.1.126 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5608 0.58 42.0 4.42e-01 77.8% 100.0%
3974673 1.1.7.96 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FIST_C 0.58 46.0 4.14e-01 88.9% 97.8%
3302817 4.1.1.362 ↗ beta barrels › SH3 › SH3 › SH3 › KOW6_SPT51-2, KOW7_SPT5 0.57 49.0 4.10e-01 95.2% 73.4%
4347919 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.57 44.0 4.00e-01 87.3% 88.9%
3408592 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 47.0 4.08e-01 93.7% 61.0%
3815479 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 46.0 4.34e-01 88.9% 93.3%
3356591 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 44.0 3.93e-01 87.3% 77.9%
4980160 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 41.0 3.70e-01 82.5% 89.0%
4518787 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.56 43.0 4.11e-01 85.7% 97.3%
4144719 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.56 39.0 3.68e-01 74.6% 77.5%
3433070 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 47.0 4.56e-01 93.7% 84.1%
3393297 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 45.0 4.25e-01 93.7% 81.2%
3514970 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 43.0 3.95e-01 95.2% 75.6%
4296283 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.53 38.0 3.54e-01 77.8% 71.8%
4259069 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 45.0 3.25e-01 100.0% 33.0%
3499855 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 43.0 4.14e-01 95.2% 100.0%
3894974 12.5.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › FIIND 0.52 41.0 3.28e-01 92.1% 62.9%
4944288 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 3.62e-01 95.2% 88.6%
3715218 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.51 38.0 3.00e-01 85.7% 47.5%
1005556 10.2.1.65 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › VP17_central_barrel 0.51 41.0 3.74e-01 92.1% 95.5%
3325360 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 38.0 3.70e-01 81.0% 84.1%
4154901 2003.1.5.156 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_31 0.50 36.0 2.30e-01 79.4% 27.5%
4163669 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.50 37.0 3.12e-01 85.7% 53.8%