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HQ316580.1__AGG58066.1__VPAG_00030__00030

Bact-Vir

HQ316580.1__AGG58066.1__VPAG_00030__00030

Identity

Accession:
HQ316580 ↗
Kingdom:
phage

Quality

91.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-93
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bd1A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.85 61.0 6.83e-01 91.6% 95.4%
2auwB02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.82 54.0 5.85e-01 75.9% 80.0%
3bs3A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.82 57.0 6.55e-01 89.2% 100.0%
2ox6D00 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.79 53.0 4.18e-01 77.1% 35.4%
1lliA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.79 62.0 6.07e-01 92.8% 77.5%
2r1jL00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.79 59.0 6.47e-01 95.2% 98.5%
6rnzA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 60.0 6.61e-01 96.4% 100.0%
1r69A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 56.0 6.32e-01 94.0% 100.0%
2xcjA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 57.0 5.75e-01 91.6% 78.6%
6wshA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 43.0 5.23e-01 81.9% 87.3%
2ef8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.75 64.0 6.40e-01 98.8% 90.5%
3ivpD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.74 57.0 5.94e-01 98.8% 90.7%
1ic8A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.74 52.0 5.04e-01 78.3% 64.9%
3op9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.74 56.0 6.08e-01 98.8% 98.5%
4pu7A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 50.0 5.30e-01 94.0% 87.3%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 53.0 5.79e-01 98.8% 100.0%
2ofyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 52.0 5.58e-01 86.7% 94.3%
2ebyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 59.0 6.04e-01 100.0% 97.5%
2hinA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 50.0 5.42e-01 96.4% 98.5%
2ictA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 58.0 5.87e-01 98.8% 96.3%
2mqkA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 47.0 5.19e-01 78.3% 95.4%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 44.0 4.84e-01 73.5% 86.2%
2b3tA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.67 48.0 4.87e-01 77.1% 76.2%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 53.0 5.53e-01 95.2% 94.8%
2f8lA01 1.10.150.470 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.65 43.0 4.36e-01 90.4% 69.1%
2fjrA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 46.0 4.81e-01 88.0% 82.9%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 36.0 3.75e-01 83.1% 62.8%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.60 45.0 4.04e-01 80.7% 93.2%
1wmgA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.59 48.0 4.76e-01 90.4% 96.7%
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 41.0 4.18e-01 90.4% 75.6%
4gkfA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.57 40.0 3.40e-01 73.5% 67.1%
4i3vA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.57 44.0 3.12e-01 83.1% 66.2%
3cexA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.57 49.0 4.00e-01 100.0% 78.8%
1ez0B01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.56 46.0 3.19e-01 94.0% 57.4%
3rh9A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.54 46.0 3.18e-01 94.0% 58.1%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 40.0 3.99e-01 92.8% 74.7%
2damA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.54 30.0 3.27e-01 78.3% 62.7%
1p2xA00 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.53 44.0 3.70e-01 97.6% 66.7%
5ekcF01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.53 44.0 3.10e-01 94.0% 57.3%
2ahoB02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.53 46.0 4.53e-01 98.8% 87.9%
6fjxA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.53 40.0 2.92e-01 85.5% 58.3%
1zq3P00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 33.0 3.59e-01 97.6% 75.0%
1vioA01 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.52 35.0 3.99e-01 80.7% 100.0%
7w5lA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.52 43.0 3.16e-01 94.0% 66.5%
7wf8B01 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.52 34.0 3.06e-01 72.3% 45.5%
3wvoC02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.51 44.0 3.87e-01 98.8% 86.2%
2guzB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.51 35.0 3.85e-01 92.8% 90.8%
2a6hF01 1.20.120.1810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.51 42.0 3.23e-01 89.2% 42.6%
1kskA01 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.51 37.0 3.94e-01 100.0% 100.0%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4004322 101.1.4.24 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › YdaS_toxin 0.83 63.0 6.62e-01 94.0% 88.0%
3982350 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.82 57.0 6.18e-01 92.8% 85.7%
4945219 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.81 57.0 6.50e-01 91.6% 100.0%
5074725 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.79 59.0 6.53e-01 91.6% 100.0%
5015485 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.78 52.0 5.73e-01 78.3% 87.7%
3947329 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.77 57.0 6.27e-01 96.4% 100.0%
4967965 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.77 57.0 6.12e-01 96.4% 92.9%
4099474 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.76 51.0 5.13e-01 75.9% 68.2%
4173793 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.75 56.0 5.69e-01 97.6% 81.2%
5039762 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.75 58.0 5.52e-01 94.0% 71.6%
3587532 101.1.4.17 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.74 48.0 5.65e-01 74.7% 100.0%
4517409 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.73 48.0 5.20e-01 75.9% 80.0%
5007716 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.73 51.0 5.45e-01 75.9% 85.7%
4010451 3788.1.1.15 alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › PF27202 0.73 49.0 5.15e-01 79.5% 77.3%
4438215 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.70 52.0 5.33e-01 78.3% 81.2%
5071803 101.45.1.0 alpha arrays › HTH › DNA polymerase II large subunit DP2 helical domain › DNA polymerase II large subunit DP2 helical domain 0.70 54.0 5.41e-01 92.8% 82.4%
4970801 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.70 50.0 4.97e-01 80.7% 72.9%
4260468 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.69 51.0 5.29e-01 77.1% 86.7%
5037780 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.69 59.0 6.07e-01 98.8% 97.5%
3588628 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.69 46.0 5.25e-01 75.9% 100.0%
3958941 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.68 48.0 4.91e-01 79.5% 76.2%
4237595 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.68 50.0 5.15e-01 79.5% 85.0%
4043422 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.68 48.0 5.05e-01 75.9% 84.0%
4632217 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.67 50.0 5.18e-01 78.3% 89.3%
4058818 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.67 49.0 5.17e-01 78.3% 88.0%
3838133 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.67 48.0 5.05e-01 77.1% 86.7%
4116870 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.67 49.0 4.96e-01 77.1% 87.5%
3609974 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.67 34.0 3.90e-01 73.5% 66.7%
3965598 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.66 49.0 5.19e-01 88.0% 94.3%
4661100 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.66 49.0 4.98e-01 79.5% 85.0%
4636337 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.66 48.0 5.05e-01 78.3% 88.0%
4030988 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.66 48.0 5.02e-01 78.3% 86.7%
3295940 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.65 40.0 4.71e-01 92.8% 92.7%
4292146 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.65 47.0 4.89e-01 77.1% 86.7%
4146098 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.65 47.0 4.87e-01 77.1% 85.3%
4079594 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.64 47.0 4.91e-01 78.3% 88.0%
5078520 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.64 53.0 5.04e-01 92.8% 76.0%
4938201 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.63 46.0 4.30e-01 78.3% 86.7%
3284468 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.62 45.0 4.48e-01 78.3% 83.0%
3182665 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.61 46.0 4.43e-01 80.7% 85.3%
4139094 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 41.0 3.93e-01 88.0% 59.0%
4934097 102.3.1.0 alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain 0.60 48.0 4.80e-01 86.7% 89.4%
5039660 2004.1.1.22 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat 0.59 53.0 3.60e-01 100.0% 30.8%
4240067 101.1.1.67 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.58 39.0 4.10e-01 98.8% 76.0%
4926993 6049.1.1.0 alpha bundles › PH0832-like › PH0832-like › PH0832-like 0.58 51.0 4.85e-01 100.0% 97.0%
3608879 531.3.1.0 alpha arrays › Domains of FliG › N-terminal domain of FliG › N-terminal domain of FliG 0.56 38.0 3.43e-01 88.0% 51.3%
3245973 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 51.0 3.14e-01 100.0% 35.1%
4545374 3054.1.1.0 alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol 0.55 39.0 3.79e-01 74.7% 75.8%
5038457 3054.1.1.0 alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol 0.55 39.0 3.53e-01 75.9% 75.8%
4242763 3054.1.1.0 alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol 0.54 37.0 3.35e-01 72.3% 59.2%
4527478 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 40.0 3.53e-01 100.0% 52.8%
3925204 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.54 39.0 3.71e-01 77.1% 81.0%
3486170 110.1.1.0 alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.54 46.0 4.34e-01 100.0% 92.4%
3851417 110.1.1.1 alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death 0.53 45.0 4.38e-01 100.0% 90.8%
4200585 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.52 37.0 3.48e-01 75.9% 84.8%
4223710 3054.1.1.0 alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol 0.52 36.0 3.35e-01 73.5% 78.2%
4270992 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.51 43.0 3.27e-01 96.4% 76.7%
4567993 632.21.1.2 alpha bundles › immunoglobulin/albumin-binding domain-like › Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 › Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 › FIVAR 0.50 37.0 4.04e-01 78.3% 100.0%