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HQ317292.1__AGH07219.1__SWTG_00088__00112
Bact-VirHQ317292.1__AGH07219.1__SWTG_00088__00112
Identity
- Accession:
- HQ317292 ↗
- Kingdom:
- phage
Quality
75.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Nerrivikvirus›
Synechococcus_phage_S-RIM2_R1_1999
TaxID: 869662
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-144
Domain cluster:
rep: IMGVR_UViG_3300025458_000424-3300025458-Ga0209559_100090112__D25-130
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00565.24 best | SNase | 46.6 | 5.90e-12 | 75.6% | 72.9% |
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bdlA03 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.76 | 62.0 | 6.51e-01 | 97.0% | 91.2% |
| 1a2tA00 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.74 | 70.0 | 7.05e-01 | 100.0% | 99.3% |
| 2wacA01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.73 | 63.0 | 6.56e-01 | 99.3% | 96.8% |
| 5j39A01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.72 | 61.0 | 6.29e-01 | 88.1% | 95.2% |
| 4qmgC01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.71 | 67.0 | 6.27e-01 | 100.0% | 90.6% |
| 3q8dA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 36.0 | 4.66e-01 | 72.6% | 94.8% |
| 2pi2D00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 35.0 | 3.67e-01 | 74.1% | 55.3% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.64 | 26.0 | 3.66e-01 | 77.8% | 76.6% |
| 4b08A01 | 2.40.50.730 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.63 | 36.0 | 4.58e-01 | 73.3% | 95.1% |
| 2iciA02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.61 | 35.0 | 4.38e-01 | 72.6% | 97.4% |
| 1fnuA01 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 35.0 | 4.39e-01 | 73.3% | 97.5% |
| 3k7uC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 40.0 | 4.57e-01 | 73.3% | 92.9% |
| 3kf6A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 35.0 | 3.55e-01 | 74.1% | 56.6% |
| 1ci3M02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.58 | 27.0 | 3.68e-01 | 78.5% | 94.8% |
| 2l2fA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.57 | 37.0 | 4.07e-01 | 99.3% | 80.6% |
| 2xvsA00 | 2.40.50.550 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 37.0 | 3.52e-01 | 78.5% | 54.2% |
| 1n02A00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.56 | 33.0 | 3.78e-01 | 100.0% | 77.5% |
| 1ue6D00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 39.0 | 4.42e-01 | 82.2% | 96.2% |
| 1u4dA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 29.0 | 3.56e-01 | 77.8% | 90.4% |
ECOD (58)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4954340 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.89 | 63.0 | 6.70e-01 | 88.9% | 81.7% |
| 3785402 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.80 | 76.0 | 7.12e-01 | 99.3% | 90.6% |
| 3869355 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.80 | 62.0 | 6.12e-01 | 88.9% | 77.1% |
| 3408546 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.79 | 53.0 | 5.96e-01 | 97.0% | 87.6% |
| 3877939 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.79 | 60.0 | 6.41e-01 | 89.6% | 89.2% |
| 3261189 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.77 | 69.0 | 6.39e-01 | 99.3% | 77.0% |
| 3765275 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.77 | 59.0 | 6.03e-01 | 90.4% | 82.3% |
| 3194464 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.76 | 72.0 | 6.64e-01 | 99.3% | 86.1% |
| 3276512 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.75 | 65.0 | 6.66e-01 | 100.0% | 93.1% |
| 3738104 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.75 | 71.0 | 6.58e-01 | 99.3% | 87.3% |
| 4026270 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.75 | 71.0 | 6.58e-01 | 100.0% | 93.9% |
| 3894374 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.74 | 64.0 | 6.60e-01 | 98.5% | 93.8% |
| 3785406 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.74 | 70.0 | 6.39e-01 | 100.0% | 91.2% |
| 4589357 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.74 | 70.0 | 6.54e-01 | 100.0% | 83.7% |
| 3930847 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.74 | 56.0 | 6.22e-01 | 87.4% | 97.3% |
| 3776626 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.73 | 65.0 | 6.27e-01 | 100.0% | 83.9% |
| 3713168 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.73 | 69.0 | 6.08e-01 | 100.0% | 80.5% |
| 3599639 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.73 | 70.0 | 6.69e-01 | 100.0% | 91.3% |
| 4023463 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.73 | 69.0 | 6.66e-01 | 100.0% | 92.7% |
| 3261239 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.73 | 69.0 | 6.39e-01 | 100.0% | 90.3% |
| 3424595 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.73 | 69.0 | 5.97e-01 | 100.0% | 93.8% |
| 3366163 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.73 | 68.0 | 6.39e-01 | 99.3% | 90.6% |
| 3596661 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.72 | 68.0 | 6.19e-01 | 100.0% | 86.9% |
| 4026269 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.72 | 68.0 | 6.78e-01 | 100.0% | 99.3% |
| 3609631 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.72 | 67.0 | 6.43e-01 | 98.5% | 96.7% |
| 3599041 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.71 | 67.0 | 6.51e-01 | 98.5% | 100.0% |
| 3791070 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.71 | 67.0 | 6.07e-01 | 100.0% | 90.3% |
| 3424596 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.71 | 67.0 | 6.51e-01 | 99.3% | 96.6% |
| 3372897 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.70 | 67.0 | 6.45e-01 | 100.0% | 94.0% |
| 3558931 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.70 | 66.0 | 6.21e-01 | 100.0% | 95.0% |
| 1833415 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.70 | 52.0 | 5.93e-01 | 79.3% | 100.0% |
| 4141240 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.70 | 38.0 | 4.82e-01 | 72.6% | 90.0% |
| 4194126 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.67 | 37.0 | 4.70e-01 | 73.3% | 91.3% |
| 4683474 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.66 | 36.0 | 4.57e-01 | 72.6% | 90.0% |
| 4463034 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.66 | 35.0 | 4.66e-01 | 71.9% | 94.7% |
| 4061669 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.65 | 36.0 | 4.56e-01 | 73.3% | 91.3% |
| 4024809 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 41.0 | 4.99e-01 | 73.3% | 96.7% |
| 4072975 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.65 | 36.0 | 4.52e-01 | 72.6% | 91.3% |
| 4082776 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.64 | 36.0 | 4.43e-01 | 73.3% | 91.3% |
| 3963148 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.62 | 37.0 | 4.26e-01 | 77.0% | 79.0% |
| 3621460 | 2.1.1.68 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI1_C | 0.62 | 45.0 | 4.43e-01 | 75.6% | 77.2% |
| 3478574 | 2.1.1.71 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TTC5_OB | 0.61 | 41.0 | 3.94e-01 | 84.4% | 59.4% |
| 4373832 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 35.0 | 3.91e-01 | 73.3% | 72.4% |
| 3585893 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 44.0 | 4.31e-01 | 74.8% | 81.4% |
| 3490309 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 36.0 | 3.66e-01 | 74.1% | 59.3% |
| 3593304 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 37.0 | 3.88e-01 | 73.3% | 66.4% |
| 5054128 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 39.0 | 4.16e-01 | 73.3% | 75.7% |
| 4200272 | 218.1.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like | 0.60 | 35.0 | 4.15e-01 | 87.4% | 85.6% |
| 3624930 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 26.0 | 2.84e-01 | 74.8% | 45.5% |
| 3375524 | 2.1.1.229 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 | 0.58 | 40.0 | 4.21e-01 | 73.3% | 78.3% |
| 5023075 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 40.0 | 4.08e-01 | 88.9% | 74.1% |
| 4615329 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 36.0 | 3.97e-01 | 80.0% | 82.7% |
| 3179638 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 37.0 | 3.73e-01 | 74.1% | 67.9% |
| 3590404 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 38.0 | 4.30e-01 | 73.3% | 99.0% |
| 4314572 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.54 | 36.0 | 4.06e-01 | 88.1% | 90.0% |
| 4026991 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 38.0 | 3.83e-01 | 73.3% | 93.3% |
| 4633023 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.52 | 37.0 | 3.70e-01 | 72.6% | 96.4% |
| 3686846 | 2.1.1.52 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 | 0.52 | 38.0 | 3.33e-01 | 74.1% | 56.9% |
D2
high
residues 153-193
Domain cluster:
rep: MT162466.1__QIN96820.1__X__00185__D7-47