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HQ317387.2__AGH07440.1__SUFG_00073__00071

Bact-Vir

HQ317387.2__AGH07440.1__SUFG_00073__00071

Identity

Accession:
HQ317387 ↗
Kingdom:
phage

Quality

88.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-69
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mc3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 60.0 5.09e-01 100.0% 78.6%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 60.0 5.27e-01 100.0% 87.0%
5w3gA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 55.0 4.68e-01 95.2% 83.6%
2jtvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 57.0 5.67e-01 100.0% 100.0%
3jckC00 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.67 53.0 3.26e-01 88.7% 16.7%
1vrmA02 1.10.3980.10 Mainly Alpha › Orthogonal Bundle › T-fold › ApbE-like superfamily 0.66 51.0 4.37e-01 83.9% 92.1%
2wteA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 57.0 5.47e-01 100.0% 98.6%
3jamK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 56.0 4.92e-01 100.0% 81.2%
3u21A00 1.10.10.2430 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NFRKB winged helix-like domain 0.62 53.0 4.39e-01 95.2% 80.7%
2iewB00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.62 45.0 3.00e-01 79.0% 32.4%
3nftA00 1.20.1710.10 Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like 0.61 47.0 3.16e-01 87.1% 48.5%
5tjjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 48.0 4.68e-01 96.8% 95.9%
2l4mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 4.39e-01 85.5% 88.4%
4wiqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 46.0 3.88e-01 87.1% 85.8%
2uuuA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.58 41.0 2.86e-01 75.8% 35.7%
2doaA00 1.10.10.2670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › E3 ubiquitin-protein ligase 0.58 49.0 4.27e-01 100.0% 65.4%
3t5xA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 43.0 4.19e-01 83.9% 93.1%
4q6rA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 45.0 3.66e-01 88.7% 53.4%
3k59A05 6.10.140.1130 Special › Helix non-globular › Helix Hairpins › 0.57 27.0 3.38e-01 87.1% 75.8%
8d40A02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.57 47.0 4.03e-01 91.9% 65.7%
3f6tA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 44.0 3.44e-01 88.7% 59.5%
1vw4700 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.56 42.0 3.60e-01 82.3% 58.5%
1zpwX00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 37.0 3.49e-01 71.0% 61.0%
3dt5A00 1.10.3940.10 Mainly Alpha › Orthogonal Bundle › AF_0924 fold › AF_0924 domain 0.55 46.0 3.86e-01 100.0% 73.9%
2i8eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 38.0 3.64e-01 72.6% 81.1%
1m6yA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 40.0 3.00e-01 82.3% 39.6%
7ovuA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 45.0 3.33e-01 100.0% 37.3%
6lbsB01 3.30.1370.230 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain 0.54 42.0 4.00e-01 90.3% 98.7%
3axfA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 37.0 3.13e-01 83.9% 39.5%
4ak1A01 2.60.40.2710 Mainly Beta › Sandwich › Immunoglobulin-like › BT4661 domain 1 0.53 41.0 3.62e-01 85.5% 66.3%
2zuvA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.57e-01 88.7% 67.9%
3f8mA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 3.87e-01 85.5% 100.0%
1gteA01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 41.0 3.48e-01 87.1% 61.5%
1tvzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.52 38.0 2.99e-01 79.0% 67.3%
1t3aA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.52 43.0 2.71e-01 100.0% 53.3%
2eggB01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.52 41.0 3.13e-01 88.7% 36.0%
3p3yA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.39e-01 82.3% 63.0%
1h0hB02 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 38.0 3.85e-01 83.9% 98.4%
3dgpA00 3.30.70.2610 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 35.0 3.55e-01 72.6% 75.8%
1iejA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 36.0 2.88e-01 79.0% 32.9%
5i8dA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.52 41.0 3.45e-01 88.7% 59.8%
2e1mA05 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.52 43.0 3.88e-01 98.4% 100.0%
1e1hB01 1.20.58.540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 40.0 3.49e-01 88.7% 58.3%
1z8fA02 3.30.63.10 Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › Guanylate Kinase phosphate binding domain 0.51 39.0 3.90e-01 85.5% 93.7%
3aqlA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 37.0 3.03e-01 82.3% 47.9%
2xfvA00 3.10.260.30 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › 0.51 38.0 3.29e-01 83.9% 71.3%
2i4lA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 37.0 2.39e-01 80.6% 73.8%
2cw7A02 1.10.10.1010 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Intein homing endonuclease, domain IV 0.51 41.0 3.32e-01 100.0% 42.5%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5079289 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 70.0 5.84e-01 95.2% 66.7%
5049535 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 68.0 6.26e-01 100.0% 90.0%
3946321 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 61.0 6.06e-01 100.0% 90.8%
5061613 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 61.0 5.49e-01 96.8% 92.9%
4993671 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 61.0 5.47e-01 100.0% 87.8%
4933236 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 62.0 5.16e-01 100.0% 70.0%
4931665 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 60.0 5.69e-01 98.4% 97.3%
3206236 101.1.2.520 alpha arrays › HTH › HTH › winged helix domain › DUF7779 0.69 61.0 5.32e-01 100.0% 77.9%
4984732 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 59.0 5.34e-01 100.0% 88.6%
4973736 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 57.0 5.44e-01 98.4% 98.7%
4864568 101.1.2.392 alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.67 58.0 4.94e-01 100.0% 91.5%
4956394 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 57.0 4.93e-01 100.0% 76.2%
5015083 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 58.0 5.41e-01 100.0% 96.2%
3603159 101.1.2.209 alpha arrays › HTH › HTH › winged helix domain › MJ1010-like_2nd 0.67 58.0 5.63e-01 100.0% 90.0%
3710117 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 57.0 5.11e-01 100.0% 78.9%
3193585 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.66 56.0 4.85e-01 100.0% 80.0%
4039619 101.1.2.2 alpha arrays › HTH › HTH › winged helix domain › Ets 0.66 55.0 4.69e-01 100.0% 81.7%
4926952 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.66 46.0 4.44e-01 72.6% 64.3%
4998317 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.66 58.0 3.91e-01 100.0% 28.9%
3174952 69.1.1.12 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end 0.66 56.0 4.74e-01 100.0% 80.9%
3960336 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 57.0 5.02e-01 100.0% 90.5%
3721546 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.66 55.0 4.73e-01 100.0% 80.0%
4980818 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 57.0 4.83e-01 100.0% 80.0%
4937536 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 55.0 5.15e-01 100.0% 96.2%
5761 230.4.1.1 a+b two layers › T-fold › ApbE-like › ApbE-like › ApbE 0.65 52.0 3.67e-01 87.1% 53.7%
4476520 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.65 55.0 4.91e-01 100.0% 90.5%
3205161 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 4.95e-01 100.0% 75.8%
5006819 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.65 55.0 4.88e-01 100.0% 75.8%
3988786 230.4.1.1 a+b two layers › T-fold › ApbE-like › ApbE-like › ApbE 0.64 52.0 3.67e-01 88.7% 51.6%
4250998 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.64 55.0 4.84e-01 100.0% 90.5%
5032533 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 54.0 4.96e-01 100.0% 92.9%
3933496 101.1.2.69 alpha arrays › HTH › HTH › winged helix domain › La 0.64 53.0 4.65e-01 96.8% 89.0%
4946238 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 55.0 3.67e-01 96.8% 26.7%
2794554 230.4.1.1 a+b two layers › T-fold › ApbE-like › ApbE-like › ApbE 0.63 52.0 3.64e-01 90.3% 52.9%
4979849 205.1.1.0 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin 0.63 44.0 4.26e-01 79.0% 65.7%
4028694 306.3.1.0 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.63 47.0 4.64e-01 82.3% 86.2%
3191365 101.1.2.520 alpha arrays › HTH › HTH › winged helix domain › DUF7779 0.62 52.0 4.67e-01 100.0% 88.4%
3397297 101.1.2.507 alpha arrays › HTH › HTH › winged helix domain › HTH_TANC1 0.62 52.0 4.13e-01 100.0% 57.2%
4356087 230.4.1.1 a+b two layers › T-fold › ApbE-like › ApbE-like › ApbE 0.62 51.0 3.63e-01 90.3% 53.0%
3864818 6171.1.1.0 alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases 0.62 43.0 2.96e-01 74.2% 28.3%
3285592 7523.1.1.3 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 0.62 41.0 3.06e-01 83.9% 25.6%
4943510 205.1.1.0 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin 0.62 43.0 4.29e-01 79.0% 70.8%
4944787 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.61 42.0 3.89e-01 72.6% 73.8%
4167630 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.61 41.0 3.74e-01 72.6% 71.1%
4588621 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.60 41.0 3.95e-01 72.6% 62.9%
3237702 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 51.0 4.66e-01 100.0% 78.8%
4207004 314.1.1.9 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.59 44.0 2.85e-01 85.5% 90.7%
3639430 314.1.1.2 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.58 46.0 2.82e-01 91.9% 87.3%
4093590 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.58 43.0 4.15e-01 83.9% 100.0%
4244261 221.1.2.1 a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 0.58 46.0 3.38e-01 93.5% 84.5%
3226739 2004.1.1.50 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin 0.57 40.0 2.92e-01 74.2% 33.5%
3953655 3696.1.1.0 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.57 39.0 3.92e-01 75.8% 70.8%
4982299 314.1.1.9 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.56 38.0 2.43e-01 71.0% 33.3%
5055309 314.1.1.9 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.56 43.0 2.81e-01 90.3% 89.1%
5010613 3696.1.1.0 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.55 40.0 4.04e-01 85.5% 75.4%
5067812 314.1.1.9 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.55 40.0 2.51e-01 77.4% 43.5%
5003344 2007.1.9.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) › AIRC 0.54 40.0 2.78e-01 82.3% 22.1%
5041848 306.3.1.0 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.54 36.0 3.72e-01 72.6% 86.7%
3216973 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 45.0 4.19e-01 100.0% 83.5%
3394339 2484.1.1.15 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 0.53 38.0 2.59e-01 77.4% 50.4%
4534043 314.1.1.9 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.53 39.0 2.57e-01 83.9% 89.6%
4336686 314.1.1.11 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.52 40.0 2.92e-01 88.7% 96.1%
4232099 2004.1.1.50 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin 0.52 40.0 2.82e-01 85.5% 25.9%
5033312 314.1.1.9 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.52 37.0 2.40e-01 77.4% 44.0%
5062919 205.1.1.22 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_21 0.52 40.0 3.77e-01 88.7% 90.0%
3402914 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.51 34.0 3.19e-01 74.2% 53.2%
4976585 7516.1.1.24 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transf_3 0.51 36.0 2.69e-01 77.4% 40.6%
4200674 314.1.1.9 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.51 40.0 2.65e-01 95.2% 90.0%
3989255 101.1.9.141 alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF536, HTH_24 0.51 37.0 2.72e-01 85.5% 30.0%
4126330 101.1.9.33 alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF536 0.50 37.0 2.85e-01 87.1% 33.8%
3630348 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 40.0 2.28e-01 100.0% 14.2%