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HQ317388.1__AGG91270.1__SWVG_00030__00028

Bact-Vir

HQ317388.1__AGG91270.1__SWVG_00030__00028

Identity

Accession:
HQ317388 ↗
Kingdom:
phage

Quality

90.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Kajamvirus› Synechococcus_phage_S-RIP1

TaxID: 754041

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-72
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qnaA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.70 42.0 3.62e-01 100.0% 38.7%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.69 42.0 3.31e-01 98.3% 31.1%
4gouA02 2.30.29.200 Mainly Beta › Roll › PH-domain like › 0.68 47.0 3.47e-01 73.3% 27.8%
6rwcA02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.66 35.0 4.06e-01 86.7% 74.4%
5ov3B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 45.0 2.84e-01 100.0% 14.5%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 44.0 3.85e-01 73.3% 46.7%
1ydmB00 3.40.50.10420 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NagB/RpiA/CoA transferase-like 0.58 47.0 3.44e-01 95.0% 36.8%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 40.0 3.43e-01 75.0% 52.0%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.55 37.0 2.86e-01 93.3% 31.4%
1y9lA00 2.40.128.230 Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM 0.55 38.0 3.22e-01 75.0% 91.8%
8oh5B01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 45.0 3.94e-01 96.7% 91.8%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.53 44.0 2.72e-01 91.7% 23.5%
2nnwA01 3.30.420.220 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.53 40.0 3.25e-01 86.7% 41.0%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 34.0 3.50e-01 75.0% 68.4%
2fe0A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 37.0 3.18e-01 76.7% 79.4%
4a8eA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.53 44.0 3.27e-01 100.0% 62.0%
1attA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 44.0 3.42e-01 100.0% 63.6%
5mw8A01 3.30.200.110 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Inositol-pentakisphosphate 2-kinase, N-lobe 0.51 44.0 3.62e-01 100.0% 89.5%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4943564 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.70 40.0 3.57e-01 96.7% 40.0%
3926425 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.69 50.0 4.25e-01 78.3% 53.0%
3931963 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 49.0 3.87e-01 78.3% 44.0%
4944397 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 43.0 4.63e-01 96.7% 80.0%
3718296 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 46.0 3.51e-01 75.0% 31.2%
3232615 220.1.1.47 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.66 45.0 3.14e-01 75.0% 21.0%
3518998 6129.1.1.9 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › RGM_C 0.65 39.0 2.90e-01 100.0% 23.9%
5021763 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.65 56.0 5.22e-01 96.7% 98.7%
3241191 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 46.0 3.72e-01 76.7% 39.1%
3771498 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.64 49.0 3.86e-01 85.0% 43.1%
3212411 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.63 43.0 2.90e-01 73.3% 30.6%
4192665 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.62 46.0 3.68e-01 78.3% 60.8%
3403344 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.62 39.0 3.91e-01 100.0% 63.3%
3178465 719.1.1.8 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF29965 0.61 51.0 4.23e-01 100.0% 83.3%
4996190 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.61 44.0 3.50e-01 78.3% 56.8%
3254115 5.1.4.56 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NUP214 0.60 46.0 2.76e-01 85.0% 85.8%
3611344 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 41.0 3.44e-01 78.3% 40.9%
3260588 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 38.0 4.11e-01 78.3% 80.0%
3782601 220.1.1.57 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_20 0.58 40.0 3.26e-01 76.7% 35.4%
3333590 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.57 37.0 3.28e-01 100.0% 47.1%
3958788 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 38.0 3.26e-01 73.3% 71.8%
3948050 4152.1.1.1 ↗ a+b two layers › Shew3726-like › Shew3726-like › Shew3726-like › DUF1488 0.56 46.0 4.31e-01 100.0% 95.0%
3404585 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 31.0 3.28e-01 86.7% 56.0%
3505220 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.55 44.0 3.42e-01 93.3% 47.2%
3512937 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.55 44.0 3.43e-01 93.3% 45.5%
3241422 3755.3.1.627 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CNH 0.55 42.0 2.53e-01 100.0% 10.7%
5035011 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.55 36.0 2.52e-01 83.3% 17.9%
5054208 251.1.1.1 ↗ a+b two layers › FYSH domain › FYSH domain › FYSH domain › SBDS 0.54 38.0 3.43e-01 85.0% 52.2%
5050689 251.1.1.1 ↗ a+b two layers › FYSH domain › FYSH domain › FYSH domain › SBDS 0.53 40.0 3.61e-01 86.7% 59.5%
5014250 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 41.0 3.80e-01 90.0% 78.8%
3471598 524.1.1.0 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p 0.51 40.0 3.12e-01 96.7% 61.8%