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HQ317390.1__AFK66715.1__COPG_00119__00119

Bact-Vir

HQ317390.1__AFK66715.1__COPG_00119__00119

Identity

Accession:
HQ317390 ↗
Kingdom:
phage

Quality

84.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-74
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.89 66.0 6.47e-01 100.0% 72.4%
2pmsC00 6.10.140.920 Special › Helix non-globular › Helix Hairpins › 0.87 67.0 5.71e-01 100.0% 53.2%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 64.0 5.25e-01 100.0% 69.9%
3e53A00 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.72 53.0 3.29e-01 79.2% 24.5%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 61.0 5.44e-01 100.0% 66.0%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 65.0 6.55e-01 98.6% 95.9%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 65.0 5.08e-01 100.0% 59.5%
1vx7301 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 51.0 5.09e-01 93.1% 74.3%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 62.0 5.41e-01 100.0% 65.1%
6vq6H01 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 66.0 4.61e-01 100.0% 85.3%
1t7pA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.69 62.0 4.70e-01 97.2% 95.5%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.66 61.0 5.36e-01 100.0% 72.5%
1yf2A02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.65 60.0 5.23e-01 100.0% 71.0%
3ffyA00 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.63 43.0 3.67e-01 70.8% 45.5%
2dw4A03 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.62 56.0 5.00e-01 100.0% 71.3%
2onfA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.62 40.0 3.23e-01 87.5% 35.8%
3go9A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.62 51.0 3.61e-01 95.8% 30.0%
3mk7C01 6.10.280.130 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 53.0 4.87e-01 100.0% 74.5%
4mt4A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.60 53.0 3.20e-01 100.0% 18.2%
6ui4A01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.56 48.0 4.53e-01 94.4% 100.0%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 31.0 3.03e-01 73.6% 44.2%
4oycB00 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.54 41.0 3.78e-01 79.2% 96.6%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 39.0 2.79e-01 76.4% 61.2%
2g0iA00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.53 47.0 4.07e-01 100.0% 69.4%
8dbsG01 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.53 45.0 3.23e-01 95.8% 71.6%
2avxA00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.52 38.0 2.92e-01 77.8% 96.5%
1vdhA01 3.30.70.1030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 0.52 44.0 3.69e-01 93.1% 59.5%
1svvB02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 38.0 3.54e-01 79.2% 78.3%
1g9mG00 2.170.40.20 Mainly Beta › Beta Complex › HIV Envelope Protein Gp120; Chain G › Human immunodeficiency virus 1, Gp160, envelope glycoprotein 0.51 41.0 2.78e-01 88.9% 91.8%
2oarB00 1.10.1200.120 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 0.51 38.0 3.15e-01 77.8% 44.8%
5ib9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 43.0 2.93e-01 98.6% 90.5%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5000789 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.82 70.0 6.09e-01 100.0% 62.9%
3210245 192.8.1.342 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › PHM7_cyt 0.80 69.0 6.69e-01 94.4% 86.3%
3790375 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.77 67.0 5.48e-01 100.0% 54.4%
4116373 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.76 64.0 3.85e-01 100.0% 14.8%
3276335 109.26.1.6 alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › TPR_NUP160_120_M 0.75 66.0 4.94e-01 98.6% 40.6%
3947163 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.74 62.0 3.76e-01 100.0% 14.9%
3691694 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.73 64.0 5.41e-01 100.0% 62.4%
4023956 3871.1.1.1 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.73 50.0 4.10e-01 80.6% 40.0%
4945806 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.72 66.0 5.50e-01 100.0% 72.5%
4025072 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.72 64.0 5.51e-01 100.0% 62.6%
3783976 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.72 64.0 5.96e-01 100.0% 80.0%
3817420 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.72 67.0 4.88e-01 100.0% 51.4%
4160852 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.72 66.0 5.25e-01 100.0% 63.8%
3716174 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.72 68.0 5.73e-01 100.0% 72.7%
3409778 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.72 67.0 5.36e-01 100.0% 67.7%
4033043 616.1.1.41 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Terminase_4 0.72 64.0 5.85e-01 100.0% 75.6%
4178886 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.71 63.0 5.68e-01 100.0% 72.0%
3628456 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.71 63.0 5.25e-01 100.0% 56.2%
4929746 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.71 65.0 5.07e-01 100.0% 57.7%
3519635 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.71 63.0 5.50e-01 100.0% 84.5%
4626792 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.71 65.0 5.10e-01 100.0% 60.0%
4047429 3281.1.1.3 alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N,Proton_antipo_C 0.70 62.0 3.60e-01 100.0% 11.3%
3506058 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.70 63.0 5.65e-01 100.0% 72.0%
3515407 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.70 64.0 4.78e-01 100.0% 53.6%
3584696 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 60.0 3.51e-01 100.0% 11.9%
3955219 633.23.1.16 alpha bundles › Bromodomain-like › Claudin › Claudin › Trp_oprn_chp 0.69 64.0 4.79e-01 100.0% 92.1%
3771989 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.69 64.0 5.09e-01 100.0% 58.5%
4083451 192.2.1.20 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ASNSD1-SEP 0.69 61.0 5.91e-01 100.0% 90.0%
3254236 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.69 61.0 5.39e-01 100.0% 71.4%
3396714 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.68 62.0 4.87e-01 100.0% 60.7%
3488760 3937.1.1.0 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 0.67 61.0 3.96e-01 100.0% 28.2%
3175179 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.67 63.0 4.81e-01 100.0% 48.0%
3630462 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.67 58.0 4.74e-01 100.0% 51.4%
3217417 5001.1.1.121 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › TRAM_LAG1_CLN8 0.66 48.0 3.15e-01 100.0% 16.8%
5059491 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.66 57.0 4.08e-01 100.0% 34.0%
3981414 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.65 59.0 3.62e-01 100.0% 17.6%
3632323 109.4.1.1580 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N, HAT_PRP39_C 0.65 50.0 3.07e-01 100.0% 15.5%
3489283 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.64 57.0 4.59e-01 98.6% 90.4%
3614646 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.63 56.0 4.39e-01 100.0% 55.5%
3398317 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.63 53.0 4.12e-01 93.1% 48.8%
3238753 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.63 54.0 4.18e-01 100.0% 48.0%
4564040 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.63 56.0 4.54e-01 100.0% 90.4%
4011414 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.63 56.0 3.97e-01 100.0% 33.5%
3621004 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.62 57.0 4.96e-01 100.0% 70.5%
3940115 604.29.1.1 alpha bundles › Spectrin repeat-like › Trehalose-6-phosphate phosphatase N-terminal helical bundle › Trehalose-6-phosphate phosphatase N-terminal helical bundle › T6PP_N 0.62 55.0 4.65e-01 97.2% 60.0%
4250601 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.62 46.0 3.51e-01 79.2% 74.7%
4458171 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 52.0 4.43e-01 100.0% 68.5%
4429278 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.60 53.0 3.26e-01 100.0% 16.6%
3397986 3755.4.1.1 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PI3K_P85_iSH2 0.60 54.0 4.02e-01 100.0% 40.0%
4968695 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.60 46.0 3.52e-01 87.5% 36.9%
4045124 7014.1.1.2 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE 0.60 52.0 3.55e-01 100.0% 63.0%
5077859 2002.1.1.12 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 0.60 53.0 3.54e-01 100.0% 31.2%
3627597 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 50.0 3.26e-01 100.0% 34.5%
3268288 5001.1.1.5 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.59 51.0 3.48e-01 100.0% 79.6%
3350168 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 50.0 4.29e-01 97.2% 82.5%
5077402 2007.15.1.0 a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase 0.57 47.0 3.57e-01 100.0% 36.8%
3691243 239.4.1.0 beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain 0.57 41.0 3.61e-01 77.8% 97.4%
3250437 239.4.1.0 beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain 0.56 39.0 3.34e-01 75.0% 42.4%
4595166 5076.2.1.0 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.55 49.0 3.48e-01 100.0% 32.4%
3991902 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.55 46.0 4.13e-01 98.6% 73.6%
3791945 5054.1.1.2 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.55 47.0 3.24e-01 90.3% 43.6%
3829017 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.54 39.0 3.84e-01 75.0% 72.0%
4478659 3435.1.1.3 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › CENP-L 0.53 42.0 2.84e-01 88.9% 77.9%
4028930 7581.1.1.1 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N 0.53 46.0 3.06e-01 95.8% 26.2%
4963141 881.1.1.44 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF6517 0.52 40.0 2.83e-01 80.6% 32.1%
271678 304.4.1.9 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Chlor_dismutase 0.52 44.0 3.57e-01 93.1% 54.1%
3924089 198.1.1.4 alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 0.51 42.0 3.46e-01 100.0% 46.9%