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HQ317390.1__AFK66732.1__COPG_00136__00136

Bact-Vir

HQ317390.1__AFK66732.1__COPG_00136__00136

Identity

Accession:
HQ317390 ↗
Kingdom:
phage

Quality

68.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-65
PDB
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zxuA00 2.40.160.200 Mainly Beta › Beta Barrel › Porin › LURP1-related 0.68 54.0 3.99e-01 100.0% 34.0%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.67 49.0 4.39e-01 100.0% 55.1%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.65 46.0 4.18e-01 95.2% 54.5%
2izvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.63 45.0 3.38e-01 77.8% 51.5%
3ddjA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.63 45.0 3.46e-01 76.2% 48.3%
5a8iA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.62 50.0 4.13e-01 88.9% 70.7%
1lmeA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.62 51.0 3.96e-01 96.8% 59.7%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.62 44.0 4.01e-01 95.2% 56.6%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.62 51.0 3.53e-01 92.1% 51.4%
4cooA03 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.60 43.0 3.38e-01 76.2% 45.3%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 45.0 3.53e-01 82.5% 85.1%
2f2hA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 47.0 3.90e-01 85.7% 80.7%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 42.0 3.81e-01 76.2% 97.7%
2ff4A03 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.59 47.0 4.04e-01 85.7% 70.4%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.58 52.0 3.52e-01 100.0% 76.6%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.58 50.0 3.44e-01 98.4% 47.9%
3ctkA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.58 47.0 3.46e-01 88.9% 40.1%
2af5A02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.58 44.0 3.49e-01 84.1% 42.8%
4nocD00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.58 41.0 3.25e-01 76.2% 58.6%
3dnsA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 44.0 3.53e-01 85.7% 69.5%
3tthB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 44.0 3.24e-01 84.1% 80.5%
2kb3A01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.57 50.0 4.03e-01 98.4% 82.5%
1w94A00 3.40.50.10480 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain 0.56 39.0 3.06e-01 76.2% 96.1%
1smpI00 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.56 42.0 3.69e-01 100.0% 53.0%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 44.0 3.23e-01 88.9% 56.3%
3fveA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.56 39.0 3.04e-01 76.2% 63.0%
3icaB00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 46.0 3.22e-01 92.1% 93.2%
1pjxA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 39.0 2.54e-01 76.2% 86.3%
2e4qA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.55 46.0 3.90e-01 93.7% 82.4%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.55 46.0 3.44e-01 100.0% 77.4%
1xffA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 40.0 2.83e-01 82.5% 35.3%
3ddjA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 39.0 3.10e-01 77.8% 91.2%
1vhsA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 44.0 3.26e-01 90.5% 61.8%
2oh1C00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 44.0 3.29e-01 96.8% 68.6%
4hh2B03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 41.0 3.68e-01 92.1% 76.0%
1d8cA02 2.170.170.11 Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain 0.52 42.0 3.45e-01 92.1% 94.5%
7ffnN01 2.60.40.3200 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, A domain 0.52 39.0 2.87e-01 82.5% 63.0%
4bhrA00 3.30.1300.70 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.52 43.0 4.06e-01 98.4% 86.4%
3qb8A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 41.0 3.06e-01 95.2% 84.8%
3mmyA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 39.0 2.55e-01 90.5% 20.3%
6n8pA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 39.0 2.49e-01 88.9% 19.8%
2jxpA01 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.50 37.0 3.01e-01 84.1% 96.5%
4tvcA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.50 41.0 3.09e-01 100.0% 92.6%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4111045 243.1.1.64 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TcaA_2nd 0.81 67.0 5.66e-01 92.1% 61.9%
3431346 2003.1.1.51 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.71 52.0 3.29e-01 77.8% 19.5%
3512133 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.70 52.0 3.30e-01 79.4% 22.4%
4259150 295.1.1.46 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › WapI 0.68 58.0 4.64e-01 100.0% 62.2%
3282123 5.1.4.275 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_NOL10_N 0.66 51.0 3.18e-01 82.5% 90.2%
3246548 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.65 53.0 3.90e-01 100.0% 32.6%
4016860 12.6.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.65 45.0 4.53e-01 85.7% 70.8%
3263745 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.65 57.0 4.24e-01 100.0% 49.4%
3924523 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.62 56.0 3.85e-01 100.0% 33.8%
1842649 73.1.1.1 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.62 50.0 4.20e-01 88.9% 74.5%
4838661 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 50.0 4.26e-01 92.1% 56.9%
3987299 289.1.1.1 a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase 0.61 51.0 4.09e-01 96.8% 65.2%
4946684 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.61 46.0 2.92e-01 84.1% 28.3%
4999343 289.1.1.1 a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase 0.61 51.0 3.87e-01 98.4% 58.8%
4960279 4294.1.1.0 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.60 44.0 4.77e-01 88.9% 98.0%
4273033 3894.1.1.2 beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfA_EBD 0.60 48.0 3.90e-01 88.9% 100.0%
3469465 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.59 45.0 2.61e-01 82.5% 35.2%
3656902 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.59 49.0 4.10e-01 92.1% 75.9%
3848155 633.23.1.1 alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.59 40.0 2.79e-01 71.4% 77.1%
166902 71.1.1.8 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.58 52.0 3.52e-01 100.0% 76.6%
4188272 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.58 46.0 3.50e-01 88.9% 35.2%
None 0.58 42.0 2.81e-01 79.4% 27.1%
4298074 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.58 49.0 3.65e-01 100.0% 41.7%
4061263 239.3.1.1 beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.58 51.0 3.71e-01 100.0% 58.9%
3524963 219.1.1.122 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF28648 0.58 42.0 2.69e-01 77.8% 18.4%
3883991 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.57 43.0 3.37e-01 92.1% 35.9%
None 0.57 44.0 2.88e-01 84.1% 21.8%
5012251 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.57 39.0 2.80e-01 71.4% 63.8%
3596980 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.57 52.0 3.56e-01 100.0% 59.5%
4583479 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.57 44.0 3.31e-01 88.9% 34.1%
4387761 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.57 44.0 3.34e-01 93.7% 33.3%
4347651 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.56 45.0 3.34e-01 93.7% 31.9%
4197307 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.56 44.0 3.35e-01 90.5% 40.6%
3587407 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.56 42.0 3.57e-01 79.4% 60.0%
3606484 66.1.1.3 beta sandwiches › ISP domain › ISP domain › ISP domain › Sol_Rieske_ferrdox 0.56 48.0 3.67e-01 98.4% 80.6%
3965839 77.1.1.6 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_2 0.55 42.0 3.18e-01 82.5% 41.9%
None 0.55 41.0 2.79e-01 82.5% 28.7%
4127270 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.55 43.0 3.22e-01 90.5% 36.2%
3904700 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.54 42.0 3.56e-01 87.3% 49.1%
1146605 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.54 43.0 3.23e-01 93.7% 32.6%
3447047 2484.1.1.110 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.54 40.0 2.60e-01 82.5% 22.1%
5014799 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.54 46.0 3.82e-01 95.2% 58.2%
3214343 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 44.0 3.94e-01 92.1% 87.8%
4067273 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.54 43.0 3.30e-01 93.7% 37.6%
5065552 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.53 37.0 2.77e-01 73.0% 40.2%
4301684 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.53 43.0 3.19e-01 93.7% 32.8%
3233008 213.1.1.49 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › DUF1248 0.53 42.0 3.05e-01 88.9% 76.3%
3652288 145.1.1.50 alpha arrays › F-box domain › F-box domain › F-box domain › Kelch_1 0.53 39.0 2.62e-01 84.1% 56.8%
4533388 219.1.1.122 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF28648 0.52 44.0 3.09e-01 100.0% 73.3%
3910175 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.47e-01 87.3% 53.3%
5051489 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.52 41.0 3.20e-01 90.5% 59.3%
3247905 12.3.1.46 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.51 42.0 3.00e-01 100.0% 83.6%
4465258 79.1.1.18 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 0.51 36.0 3.18e-01 82.5% 49.0%
3272787 213.1.1.19 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FR47 0.50 41.0 3.14e-01 93.7% 50.6%
D2 medium residues 90-144
PDB