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HQ317390.1__AFK66738.1__COPG_00142__00142

Bact-Vir

HQ317390.1__AFK66738.1__COPG_00142__00142

Identity

Accession:
HQ317390 ↗
Kingdom:
phage

Quality

72.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-160
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ucrB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 42.0 5.36e-01 70.7% 90.7%
2fswA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 46.0 4.99e-01 78.0% 77.5%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 45.0 5.48e-01 84.6% 100.0%
3ckdA02 1.20.58.360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines 0.71 40.0 4.01e-01 90.2% 54.0%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 40.0 4.94e-01 89.4% 89.6%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 45.0 4.48e-01 81.3% 63.5%
1ku9B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 48.0 5.51e-01 84.6% 100.0%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 47.0 4.56e-01 82.1% 62.8%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 46.0 4.32e-01 84.6% 57.5%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 45.0 4.21e-01 81.3% 54.7%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 42.0 4.58e-01 73.2% 73.1%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 44.0 4.34e-01 81.3% 62.1%
6kf9G01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 44.0 5.21e-01 80.5% 100.0%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 48.0 5.39e-01 87.0% 100.0%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 45.0 4.43e-01 82.1% 63.4%
3u1dB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 46.0 4.42e-01 78.0% 61.5%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 45.0 4.89e-01 73.2% 83.5%
7vb8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 44.0 4.59e-01 70.7% 85.0%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 43.0 4.03e-01 81.3% 56.3%
4g6qA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 43.0 5.05e-01 87.0% 100.0%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 40.0 4.70e-01 78.9% 91.0%
2p4wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 43.0 4.70e-01 78.0% 85.4%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.62 43.0 4.99e-01 96.7% 98.9%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 39.0 4.66e-01 76.4% 98.8%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 4.63e-01 94.3% 86.1%
1s7bA00 1.10.3730.20 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › 0.55 39.0 4.15e-01 72.4% 92.5%
3rsnA00 3.90.980.20 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › 0.55 46.0 4.15e-01 89.4% 94.5%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 4.14e-01 78.0% 79.2%
2as0A03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 47.0 3.89e-01 94.3% 87.2%
7dd0C01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 42.0 3.44e-01 83.7% 56.5%
3e1sA01 1.10.10.2220 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 37.0 4.15e-01 77.2% 92.6%
4lg1B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 47.0 3.92e-01 96.7% 85.0%
3me5A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 44.0 3.55e-01 91.1% 72.6%
3p2hA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 42.0 3.72e-01 86.2% 98.9%
4dmgA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 44.0 3.77e-01 92.7% 85.3%
3c0kA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 43.0 3.68e-01 91.9% 86.4%
5h02A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 44.0 3.90e-01 92.7% 91.0%
2qm3A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 43.0 3.60e-01 92.7% 85.0%
3hx3A01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.52 28.0 3.61e-01 74.0% 95.5%
1d2gA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 44.0 3.83e-01 93.5% 94.7%
2b78A03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 42.0 3.61e-01 91.9% 86.1%
3bguA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 32.0 3.57e-01 96.7% 81.2%
3g6sA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.50 42.0 3.38e-01 92.7% 86.6%
2ab5B01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.50 37.0 3.68e-01 78.0% 86.7%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5082509 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.67 43.0 4.28e-01 76.4% 61.5%
4664382 101.1.2.293 alpha arrays › HTH › HTH › winged helix domain › IncFII_repA 0.67 56.0 4.80e-01 90.2% 74.4%
5078033 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.67 47.0 5.32e-01 77.2% 94.7%
5025457 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.66 52.0 5.57e-01 82.9% 96.2%
4508433 314.1.1.3 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.66 42.0 2.93e-01 76.4% 21.1%
3250067 101.1.2.271 alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC 0.65 49.0 5.39e-01 84.6% 96.0%
5018390 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 47.0 4.82e-01 91.9% 78.2%
4936984 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 48.0 4.97e-01 78.0% 83.9%
4941556 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 44.0 4.77e-01 76.4% 82.7%
4971999 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 49.0 4.96e-01 80.5% 83.2%
5018207 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.64 46.0 4.81e-01 73.2% 90.9%
5077356 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 50.0 4.99e-01 81.3% 84.0%
4953109 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.64 45.0 5.06e-01 73.2% 95.8%
3468223 101.1.2.90 alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.64 53.0 3.78e-01 88.6% 42.9%
5037625 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 48.0 5.15e-01 83.7% 92.4%
3655782 101.1.2.598 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, POLR3C_WHD 0.63 49.0 3.58e-01 81.3% 46.6%
5027451 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.63 46.0 4.90e-01 80.5% 88.6%
4945595 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 40.0 4.17e-01 77.2% 69.6%
5010472 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 46.0 5.00e-01 76.4% 96.0%
3589018 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 50.0 4.37e-01 83.7% 64.0%
4971711 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 47.0 4.74e-01 80.5% 81.6%
3713148 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 36.0 4.10e-01 78.0% 75.8%
5074554 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 45.0 3.84e-01 80.5% 47.7%
3625937 101.1.2.216 alpha arrays › HTH › HTH › winged helix domain › CED4_WHD 0.61 45.0 4.23e-01 78.0% 62.7%
3467403 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.61 39.0 4.73e-01 78.0% 100.0%
3509042 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 52.0 5.18e-01 91.9% 93.8%
3830291 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.61 43.0 3.00e-01 80.5% 22.0%
3743779 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.60 48.0 4.50e-01 86.2% 89.0%
4995231 101.1.2.914 alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.60 42.0 4.83e-01 81.3% 98.9%
3321732 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 44.0 4.76e-01 82.1% 93.0%
3827266 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 45.0 4.26e-01 80.5% 66.2%
3479163 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 44.0 4.34e-01 75.6% 75.4%
3708523 101.1.2.382 alpha arrays › HTH › HTH › winged helix domain › WHD 0.59 53.0 4.37e-01 96.7% 82.3%
4990676 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.59 44.0 4.62e-01 78.9% 87.3%
3659982 101.1.10.7 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.59 44.0 4.35e-01 79.7% 100.0%
5062364 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 43.0 4.68e-01 95.1% 89.5%
4029192 101.1.2.236 alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.59 49.0 3.44e-01 88.6% 50.7%
3938245 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.58 49.0 4.04e-01 89.4% 84.6%
3187460 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.58 49.0 4.23e-01 89.4% 95.7%
4012739 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 49.0 4.74e-01 89.4% 97.0%
3454577 101.1.2.245 alpha arrays › HTH › HTH › winged helix domain › PORR 0.58 51.0 3.72e-01 96.7% 62.4%
3332597 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.58 46.0 3.73e-01 86.2% 79.2%
3692895 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.57 48.0 3.90e-01 89.4% 80.4%
3640260 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.57 48.0 4.03e-01 89.4% 89.8%
4004118 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.57 48.0 4.19e-01 90.2% 97.3%
3434805 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.57 43.0 4.68e-01 80.5% 94.3%
4443506 101.1.2.517 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD 0.57 47.0 3.24e-01 88.6% 42.1%
5000735 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 4.14e-01 88.6% 98.3%
3809863 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 45.0 4.25e-01 85.4% 70.7%
5082704 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.56 47.0 4.01e-01 89.4% 91.3%
3173396 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 40.0 4.18e-01 72.4% 100.0%
4025929 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 43.0 4.45e-01 80.5% 87.8%
3781172 101.1.2.517 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD 0.55 49.0 3.37e-01 95.1% 97.8%
4135068 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 48.0 3.32e-01 95.1% 97.1%
3662349 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.55 45.0 4.57e-01 87.0% 95.0%
3859166 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.55 47.0 3.90e-01 94.3% 80.3%
None 0.54 45.0 3.40e-01 92.7% 58.3%
5012709 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 47.0 3.78e-01 95.1% 89.8%
3464534 101.1.2.641 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1, DUF7647 0.54 46.0 3.00e-01 93.5% 27.2%
None 0.53 45.0 3.40e-01 93.5% 58.4%
5064977 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 34.0 4.17e-01 73.2% 100.0%
5057183 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.53 38.0 4.13e-01 74.0% 96.8%
5082698 101.1.2.914 alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.53 36.0 4.08e-01 80.5% 95.6%
3995832 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.52 44.0 3.89e-01 93.5% 95.7%
5004974 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.52 43.0 3.15e-01 91.1% 47.4%
3429092 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.52 44.0 3.54e-01 93.5% 77.1%
3167817 101.1.2.251 alpha arrays › HTH › HTH › winged helix domain › DUF6581 0.51 45.0 3.78e-01 93.5% 95.5%
3598257 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.51 43.0 3.35e-01 93.5% 73.2%
3798236 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.51 42.0 3.58e-01 91.1% 81.4%