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HQ317392.1__AGH07779.1__CEPG_00031__00031
Bact-VirHQ317392.1__AGH07779.1__CEPG_00031__00031
Identity
- Accession:
- HQ317392 ↗
- Kingdom:
- phage
Quality
87.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 33-129
Domain cluster:
rep: MG592611.1__AUR98074.1__NVP1246O_67__00067__D100-200
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fgeA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.63 | 44.0 | 3.64e-01 | 72.2% | 73.3% |
| 1xg9A02 | 3.10.25.20 | Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › | 0.57 | 35.0 | 4.09e-01 | 72.2% | 93.5% |
| 3drwB01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.53 | 42.0 | 2.97e-01 | 87.6% | 96.1% |
| 6em3x01 | 3.40.50.10480 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain | 0.52 | 43.0 | 3.44e-01 | 87.6% | 84.3% |
| 1gc5A01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 44.0 | 3.07e-01 | 95.9% | 91.7% |
| 1oi2A02 | 3.30.1180.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 | 0.51 | 36.0 | 3.10e-01 | 73.2% | 77.8% |
| 6y43A01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.51 | 36.0 | 3.21e-01 | 74.2% | 63.3% |
| 6vbkA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.51 | 45.0 | 4.28e-01 | 100.0% | 83.8% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3193527 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.63 | 46.0 | 3.66e-01 | 77.3% | 68.5% |
| 4145938 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.59 | 40.0 | 3.99e-01 | 70.1% | 95.0% |
| 4051669 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.58 | 41.0 | 4.16e-01 | 73.2% | 80.0% |
| 4033714 | 1.1.13.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tail | 0.56 | 43.0 | 4.33e-01 | 80.4% | 96.8% |
| 3198822 | 2008.1.1.144 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27653 | 0.54 | 48.0 | 3.40e-01 | 96.9% | 78.6% |
| 2157033 | 2003.6.1.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › ADP_PFK_GK | 0.53 | 45.0 | 2.94e-01 | 96.9% | 95.1% |
| 4994500 | 2003.6.1.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › ADP_PFK_GK | 0.53 | 45.0 | 3.01e-01 | 95.9% | 95.6% |
| 3200218 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 48.0 | 3.69e-01 | 100.0% | 96.7% |
| 4037091 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.53 | 36.0 | 3.43e-01 | 76.3% | 59.1% |
| 1065861 | 2003.6.1.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › ADP_PFK_GK | 0.53 | 45.0 | 2.92e-01 | 95.9% | 93.6% |
| 3279508 | 283.1.1.4 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › ThrE | 0.53 | 35.0 | 3.10e-01 | 73.2% | 48.1% |
| 3607539 | 7502.1.1.2 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix | 0.52 | 43.0 | 3.27e-01 | 88.7% | 71.6% |
| 3208220 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 46.0 | 3.56e-01 | 100.0% | 87.8% |
| 4028672 | 7502.1.1.2 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix | 0.52 | 43.0 | 3.23e-01 | 87.6% | 72.4% |
| 4936965 | 2003.6.1.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › ADP_PFK_GK | 0.52 | 44.0 | 2.96e-01 | 95.9% | 95.4% |
| 4926919 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.52 | 37.0 | 2.66e-01 | 76.3% | 43.3% |
D2
medium
residues 136-169
Domain cluster:
representative