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HQ317392.1__AGH07786.1__CEPG_00038__00038

Bact-Vir

HQ317392.1__AGH07786.1__CEPG_00038__00038

Identity

Accession:
HQ317392 ↗
Kingdom:
phage

Quality

80.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cellulophaga_phage_phiSM

TaxID: 756280

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 34-84
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zadA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 47.0 3.61e-01 92.2% 38.6%
4b9iA00 2.60.40.3480 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 45.0 3.50e-01 92.2% 42.4%
3s1sA01 3.90.1570.30 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.54 40.0 2.94e-01 86.3% 57.4%
3ai4A00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.53 40.0 2.61e-01 84.3% 64.5%
4wyqB00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 35.0 3.24e-01 100.0% 48.0%
4k90A01 3.10.170.10 Alpha Beta › Roll › Elastase; domain 1 › 0.52 38.0 2.70e-01 84.3% 74.1%
3czbA02 2.40.240.50 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Barwin-like endoglucanases 0.52 36.0 2.75e-01 76.5% 81.9%
3fcyA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 39.0 2.54e-01 92.2% 41.0%
5yyfA00 2.60.40.1970 Mainly Beta › Sandwich › Immunoglobulin-like › YEATS domain 0.52 43.0 3.29e-01 100.0% 69.6%
4uy9A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 40.0 3.49e-01 98.0% 76.7%
3i6uA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 39.0 3.35e-01 88.2% 70.1%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3812213 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.69 48.0 3.33e-01 100.0% 22.4%
3427908 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 46.0 3.82e-01 100.0% 38.9%
3460608 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.66 45.0 3.01e-01 100.0% 16.8%
3935879 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 46.0 3.11e-01 100.0% 19.5%
3750587 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 44.0 2.92e-01 100.0% 16.4%
3439912 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 45.0 3.63e-01 100.0% 37.0%
3177640 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.64 44.0 2.92e-01 100.0% 16.4%
3681535 902.1.1.2 ↗ few secondary structure elements › Amb V allergen › Amb V allergen › Amb V allergen › Meg 0.59 37.0 4.10e-01 100.0% 84.6%
5043789 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.57 41.0 3.33e-01 80.4% 71.3%
3510767 3343.1.1.2 ↗ alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal 0.56 43.0 2.47e-01 90.2% 8.0%
4024082 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.54 38.0 2.45e-01 94.1% 12.9%
3481729 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.54 44.0 3.39e-01 92.2% 97.5%
3231090 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.53 39.0 3.36e-01 100.0% 46.7%
3197067 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.52 36.0 3.41e-01 96.1% 56.9%
3590089 4012.3.1.6 ↗ a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 › DUF5406 0.52 42.0 4.28e-01 94.1% 93.9%
3367636 7575.1.1.11 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › PF31181 0.51 38.0 2.41e-01 80.4% 87.6%