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HQ317393.2__AGN30064.1__VPFG_00061__00274

Bact-Vir

HQ317393.2__AGN30064.1__VPFG_00061__00274

Identity

Accession:
HQ317393 ↗
Kingdom:
phage

Quality

72.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Mylasvirus› Vibrio_phage_nt-1

TaxID: 115992

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 29-82
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v05A01 2.10.270.20 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › 0.64 44.0 3.34e-01 72.2% 82.8%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.63 38.0 3.76e-01 77.8% 55.2%
2r31A01 3.30.2180.10 Alpha Beta › 2-Layer Sandwich › ATP12-like › ATP12-like 0.61 42.0 3.99e-01 74.1% 62.1%
3kifD00 2.20.25.650 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Tachylectin-2-like 0.58 39.0 3.30e-01 70.4% 45.1%
1dq3A02 3.30.160.90 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 37.0 3.36e-01 72.2% 46.1%
1tl2A00 2.115.10.10 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Tachylectin 2 0.56 38.0 2.50e-01 70.4% 17.4%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 35.0 3.63e-01 75.9% 68.1%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.56 38.0 3.38e-01 72.2% 65.9%
4gp0B02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 38.0 3.02e-01 74.1% 59.3%
1bymA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.55 36.0 3.06e-01 83.3% 37.1%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 38.0 3.10e-01 75.9% 55.0%
2fmlA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.54 39.0 2.89e-01 81.5% 78.0%
2q07A02 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.54 34.0 3.24e-01 70.4% 50.8%
2yzsA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.53 37.0 3.32e-01 75.9% 65.0%
7kfuC01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.52 36.0 3.31e-01 74.1% 72.0%
5a8iA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 37.0 3.03e-01 79.6% 83.6%
1o9yC00 2.30.330.10 Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like 0.51 36.0 3.28e-01 74.1% 77.8%
2gtiA01 3.30.160.820 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Nsp15 N-terminal domain-like 0.51 36.0 3.44e-01 74.1% 68.8%
6i18A04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 34.0 2.87e-01 72.2% 77.6%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4593898 2.1.1.16 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind 0.73 55.0 3.92e-01 81.5% 94.8%
3704121 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.64 44.0 4.34e-01 72.2% 86.2%
3865098 4351.1.1.1 ↗ alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 0.63 43.0 2.82e-01 72.2% 16.7%
3589933 243.3.1.11 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Staphopain_pro 0.62 38.0 2.72e-01 70.4% 20.2%
3180298 4351.1.1.1 ↗ alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 0.61 43.0 2.69e-01 77.8% 13.9%
5025174 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.60 40.0 3.68e-01 74.1% 52.9%
4012965 4351.1.1.0 ↗ alpha arrays › ATP12-like › ATP12-like › ATP12-like 0.60 39.0 2.57e-01 77.8% 14.6%
1692307 4011.1.1.0 ↗ beta barrels › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins 0.57 38.0 3.54e-01 70.4% 83.8%
1712060 2003.1.5.85 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.56 39.0 2.75e-01 75.9% 23.9%
1032602 4.1.1.127 ↗ beta barrels › SH3 › SH3 › SH3 › DtxR 0.55 36.0 3.06e-01 83.3% 37.1%
3250073 592.7.1.0 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.55 39.0 2.99e-01 75.9% 57.1%
4231688 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 39.0 3.33e-01 77.8% 70.0%
4872108 2003.1.5.85 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.54 39.0 2.69e-01 77.8% 22.5%
6441 243.6.1.8 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › AF_0587-like_pre-PUA 0.54 34.0 3.22e-01 70.4% 50.0%
3899113 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.53 38.0 2.93e-01 81.5% 92.7%
3959450 3504.2.1.1 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.53 35.0 2.79e-01 87.0% 30.0%
5034935 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.51 34.0 3.19e-01 74.1% 52.9%
2756984 11.40.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-like domain in paramyxoviruses fusion protein › Immunoglobulin-like domain in paramyxoviruses fusion protein › Fusion_gly 0.50 34.0 3.11e-01 70.4% 78.7%
3579123 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.50 37.0 2.37e-01 83.3% 24.1%
3821141 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.50 34.0 2.17e-01 70.4% 27.9%