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HQ317393.2__AGN30185.1__VPFG_00185__00400

Bact-Vir

HQ317393.2__AGN30185.1__VPFG_00185__00400

Identity

Accession:
HQ317393 ↗
Kingdom:
phage

Quality

89.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Mylasvirus› Vibrio_phage_nt-1

TaxID: 115992

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-79
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2opkB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 40.0 3.73e-01 76.6% 50.0%
1wkbA02 3.90.740.10 Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.63 44.0 3.13e-01 71.4% 34.8%
7dm9A01 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.58 41.0 3.22e-01 74.0% 71.7%
2q0oA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.54 37.0 2.96e-01 94.8% 32.7%
4gc8B00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.54 39.0 3.04e-01 75.3% 71.8%
1m55A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.54 40.0 3.10e-01 81.8% 97.9%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.50 35.0 2.96e-01 72.7% 76.1%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3988347 140.1.1.0 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.72 49.0 3.67e-01 70.1% 44.3%
4074695 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.72 49.0 3.66e-01 70.1% 44.3%
4574076 1.1.1.7 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.71 49.0 3.60e-01 71.4% 42.6%
4355247 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.70 49.0 3.61e-01 71.4% 42.6%
4106902 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.59 40.0 3.11e-01 72.7% 43.2%
3797988 376.1.1.43 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PRT6_C 0.55 42.0 3.55e-01 83.1% 88.9%
3693314 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.55 37.0 2.52e-01 70.1% 37.6%
3738154 3351.1.1.1 ↗ a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.54 40.0 3.54e-01 83.1% 55.2%
4340143 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 37.0 3.92e-01 81.8% 85.5%
3568886 2492.1.1.29 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › APOBEC4_like 0.51 42.0 3.15e-01 93.5% 54.0%
D2 high residues 82-172
PDB
Domain cluster: rep: OR521068.1__WNO26777.1__SEA_GROUNDHOG_91__00090__D91-178
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ekfA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.71 29.0 3.98e-01 97.8% 73.9%
1ft9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 38.0 4.03e-01 97.8% 68.4%
1o3sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 35.0 3.89e-01 96.7% 76.8%
3d0sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 35.0 3.68e-01 96.7% 67.5%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 31.0 3.33e-01 95.6% 62.5%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 33.0 3.46e-01 96.7% 64.0%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 33.0 3.48e-01 96.7% 67.1%
2h6bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 34.0 3.36e-01 96.7% 59.4%
2krxA01 3.90.940.40 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › Protein CHLORORESPIRATORY REDUCTION 7 0.52 31.0 3.36e-01 98.9% 73.6%
4ertA01 1.10.490.160 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.51 41.0 3.52e-01 93.4% 85.3%
5d1iA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 44.0 4.05e-01 96.7% 91.5%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
184960 3489.1.1.1 ↗ a+b complex topology › ArdA › ArdA › ArdA › ArdA 0.75 69.0 5.60e-01 100.0% 56.4%
3933288 103.1.1.14 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 0.71 32.0 4.34e-01 100.0% 84.4%
3284524 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.64 41.0 3.82e-01 89.0% 51.3%
5079223 183.1.1.1 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Fe_dep_repr_C 0.60 34.0 2.92e-01 70.3% 33.1%
3163911 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.58 37.0 3.28e-01 98.9% 44.6%