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HQ317393.2__AGN30225.2__VPFG_00225__00037
Bact-VirHQ317393.2__AGN30225.2__VPFG_00225__00037
Identity
- Accession:
- HQ317393 ↗
- Kingdom:
- phage
Quality
50.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Mylasvirus›
Vibrio_phage_nt-1
TaxID: 115992
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 26-72
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.56 | 44.0 | 3.87e-01 | 97.9% | 64.6% |
| 2z5bA00 | 3.30.230.100 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.53 | 38.0 | 2.84e-01 | 76.6% | 44.1% |
| 2wjeA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.53 | 42.0 | 2.73e-01 | 93.6% | 96.3% |
| 1a9xA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.52 | 41.0 | 3.77e-01 | 100.0% | 64.3% |
| 7ejoB01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.52 | 40.0 | 3.57e-01 | 100.0% | 69.9% |
| 2uytA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 40.0 | 2.64e-01 | 89.4% | 68.1% |
| 3hulA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.51 | 45.0 | 3.35e-01 | 97.9% | 55.7% |
| 3io5A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 40.0 | 2.55e-01 | 85.1% | 33.9% |
| 1yk9A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.50 | 39.0 | 2.67e-01 | 89.4% | 79.3% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3986000 | 2488.1.1.18 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › DTW | 0.66 | 54.0 | 3.47e-01 | 89.4% | 76.3% |
| 3970701 | 560.1.1.0 ↗ | few secondary structure elements › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain | 0.57 | 42.0 | 4.36e-01 | 97.9% | 100.0% |
| 3952775 | 2492.1.1.35 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › DUF4192 | 0.56 | 45.0 | 3.18e-01 | 89.4% | 76.1% |
| 3496315 | 2002.1.1.96 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › S-methyl_trans | 0.56 | 43.0 | 2.58e-01 | 87.2% | 41.7% |
| 3238189 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 42.0 | 3.11e-01 | 100.0% | 29.3% |
| 3258916 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.53 | 40.0 | 2.94e-01 | 87.2% | 39.3% |
| 3651549 | 2005.1.1.28 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › FAD_syn | 0.52 | 44.0 | 2.91e-01 | 95.7% | 90.5% |
D2
high
residues 76-126_139-174