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HQ332137.1__AGG54562.1__PRSG_00008__00008

Bact-Vir

HQ332137.1__AGG54562.1__PRSG_00008__00008

Identity

Accession:
HQ332137 ↗
Kingdom:
phage

Quality

78.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Tritonvirus› Prochlorococcus_phage_P-SSP3

TaxID: 382273

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 58-117
PDB
Domain cluster: rep: NC_031927.1__YP_009322960.1__BOW86_gp027__00027__D11-64
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.78 51.0 3.74e-01 98.3% 27.2%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.69 50.0 3.69e-01 98.3% 29.7%
1p1hB01 3.30.2360.10 Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain 0.68 44.0 3.16e-01 70.0% 22.7%
5yotA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 38.0 3.04e-01 98.3% 32.5%
7t4dA01 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.60 50.0 3.30e-01 98.3% 84.8%
2d42A01 2.170.15.10 Mainly Beta › Beta Complex › Proaerolysin; Chain A, domain 3 › Proaerolysin, chain A, domain 3 0.58 51.0 3.65e-01 98.3% 45.7%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.55 39.0 3.43e-01 78.3% 77.5%
3wlvA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.55 47.0 3.05e-01 100.0% 34.7%
1dgjA07 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.55 38.0 2.73e-01 75.0% 22.6%
4tw1B00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.54 47.0 3.04e-01 98.3% 63.5%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.54 36.0 2.99e-01 70.0% 85.5%
4mb8D00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.54 44.0 2.84e-01 100.0% 19.0%
3anzC00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.53 44.0 2.93e-01 100.0% 85.4%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.52 37.0 3.22e-01 78.3% 98.1%
3op2A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 34.0 2.73e-01 70.0% 31.8%
1o54A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 35.0 2.60e-01 75.0% 24.4%
4mt4A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.50 40.0 2.50e-01 100.0% 85.0%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5010248 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.77 51.0 4.59e-01 78.3% 51.2%
4490121 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.74 39.0 3.34e-01 81.7% 32.6%
5014259 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.67 44.0 3.96e-01 78.3% 48.2%
3816078 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.64 45.0 3.59e-01 75.0% 37.5%
5054385 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.63 43.0 4.15e-01 75.0% 61.4%
1113255 3752.1.1.1 ↗ a+b complex topology › L-Lys epsilon-oxidase C-terminal domain › L-Lys epsilon-oxidase C-terminal domain › L-Lys epsilon-oxidase C-terminal domain › LodA_C 0.63 52.0 3.15e-01 95.0% 51.1%
2663914 265.1.1.1 ↗ a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat 0.63 40.0 3.16e-01 98.3% 33.3%
4230774 101.1.9.117 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_assoc 0.62 38.0 3.33e-01 78.3% 38.9%
4966376 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.58 38.0 2.47e-01 71.7% 12.4%
3223309 11.1.1.934 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N, Arrestin_C 0.57 39.0 2.63e-01 75.0% 36.4%
2997715 11.13.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin 0.56 48.0 3.14e-01 100.0% 78.9%
3795886 11.1.1.298 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Integrin_A_Ig_3 0.56 39.0 3.69e-01 96.7% 60.0%
3939681 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.56 39.0 2.48e-01 75.0% 18.5%
4950334 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.55 43.0 2.95e-01 96.7% 42.1%
3421099 225.1.1.2 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HSP90,HATPase_c_3 0.55 41.0 2.86e-01 90.0% 70.6%
4581432 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.54 42.0 3.09e-01 93.3% 28.9%
4930176 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.53 43.0 2.94e-01 100.0% 27.2%
5019455 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.53 39.0 2.89e-01 85.0% 86.2%
4608078 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.53 38.0 2.40e-01 76.7% 14.3%
3613595 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 35.0 2.28e-01 70.0% 71.3%
3621823 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.53 33.0 3.19e-01 100.0% 54.3%
3312580 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.52 42.0 2.86e-01 96.7% 62.1%
4961086 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.52 43.0 3.28e-01 100.0% 67.1%
4437448 7026.1.1.5 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › ATG2_CAD 0.51 41.0 2.81e-01 93.3% 45.0%
3957104 11.13.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › MspA 0.50 40.0 3.00e-01 98.3% 46.8%
D2 medium residues 118-173
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ecmB00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.66 57.0 4.87e-01 100.0% 94.7%
5cz2C00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 40.0 2.98e-01 71.4% 82.9%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5008279 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.67 56.0 4.77e-01 96.4% 86.3%
3400256 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.66 52.0 4.27e-01 85.7% 52.0%
3629922 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.59 46.0 3.88e-01 85.7% 61.1%
D3 medium residues 174-236
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k9iA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 41.0 3.58e-01 74.6% 44.7%
5mmiJ02 1.10.10.250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain 0.55 35.0 3.41e-01 74.6% 58.0%
1x3kA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 42.0 3.26e-01 85.7% 42.9%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4933335 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.71 50.0 4.65e-01 74.6% 71.2%
3397433 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.71 39.0 3.23e-01 96.8% 33.3%
4030237 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.68 52.0 4.41e-01 81.0% 90.0%
3817383 109.4.1.401 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NRDE-2 0.62 50.0 4.22e-01 92.1% 80.9%
3170937 4177.1.1.1 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.54 49.0 3.16e-01 100.0% 85.5%