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HQ332138.1__AGN33755.1__PANG_00035__00034

Bact-Vir

HQ332138.1__AGN33755.1__PANG_00035__00034

Identity

Accession:
HQ332138 ↗
Kingdom:
phage

Quality

85.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-85
PDB
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7y11B01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.66 40.0 4.51e-01 75.9% 81.0%
7e4nA01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.66 58.0 4.04e-01 100.0% 68.0%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.63 46.0 4.67e-01 77.1% 80.2%
6ldiF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 45.0 4.31e-01 75.9% 67.7%
2a6hF01 1.20.120.1810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 44.0 3.51e-01 75.9% 83.6%
1rp3A01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.61 46.0 4.64e-01 83.1% 82.4%
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.61 43.0 4.00e-01 73.5% 68.6%
1jkwA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 54.0 5.08e-01 100.0% 96.0%
4bemJ00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.60 49.0 3.87e-01 90.4% 88.4%
4f7nB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 55.0 4.62e-01 100.0% 69.1%
2ivxB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 54.0 4.83e-01 100.0% 78.3%
3kdgA02 3.30.1370.100 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › MutL, C-terminal domain, regulatory subdomain 0.59 49.0 4.78e-01 92.8% 95.7%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.59 43.0 2.90e-01 78.3% 42.5%
4ip8A00 1.10.132.110 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein 0.56 36.0 3.39e-01 98.8% 51.4%
1bgvA03 1.10.285.10 Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Glutamate Dehydrogenase, chain A, domain 3 0.56 45.0 4.69e-01 95.2% 100.0%
5tj5E00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.55 43.0 3.75e-01 89.2% 92.0%
6l2cB00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.55 48.0 3.11e-01 100.0% 52.4%
2vy1A00 1.10.4180.10 Mainly Alpha › Orthogonal Bundle › Protein LEAFY › Protein LEAFY 0.53 43.0 3.46e-01 88.0% 69.3%
5iceA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 34.0 3.21e-01 90.4% 53.5%
3lwjA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 38.0 2.94e-01 77.1% 36.8%
2oqgB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 31.0 2.85e-01 78.3% 43.5%
3qxlA00 1.10.840.10 Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain 0.51 38.0 2.78e-01 80.7% 93.5%
3kh1A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.51 45.0 3.45e-01 100.0% 68.7%
2xzn800 3.30.63.20 Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › 0.51 31.0 3.05e-01 91.6% 53.8%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 34.0 3.36e-01 92.8% 64.4%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3288147 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.67 48.0 4.57e-01 75.9% 63.0%
3411371 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.66 50.0 5.23e-01 83.1% 89.3%
3626373 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.66 59.0 5.63e-01 96.4% 97.9%
61904 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.66 47.0 4.70e-01 75.9% 79.1%
3940544 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 55.0 5.17e-01 96.4% 90.5%
3839294 148.1.3.26 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_9 0.65 51.0 5.10e-01 86.7% 97.6%
4524644 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.63 45.0 3.42e-01 75.9% 40.5%
3691127 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.63 55.0 5.31e-01 98.8% 100.0%
3971939 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.62 47.0 4.75e-01 83.1% 81.2%
3377590 101.1.10.7 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.62 55.0 4.96e-01 98.8% 79.1%
3727160 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.62 50.0 5.25e-01 96.4% 100.0%
3861204 103.4.1.2 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M 0.62 53.0 4.91e-01 98.8% 85.5%
3664504 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.62 45.0 3.67e-01 77.1% 42.4%
5023341 4009.1.1.1 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.62 44.0 4.68e-01 75.9% 90.0%
3650365 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.60 54.0 5.16e-01 100.0% 100.0%
3805676 1128.1.1.13 alpha bundles › LYR protein › LYR protein › LYR protein › PF30094 0.59 44.0 4.33e-01 80.7% 87.8%
4331817 610.3.1.1 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.58 50.0 3.99e-01 98.8% 48.9%
4624390 142.1.1.1 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 0.58 46.0 4.21e-01 89.2% 91.3%
4053923 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.57 47.0 4.36e-01 90.4% 100.0%
4837332 3238.2.1.0 alpha superhelices › Mitochondrial mTERF-like › Transcription activator-like effector (TALE) › Transcription activator-like effector (TALE) 0.57 48.0 3.67e-01 96.4% 38.4%
4269761 142.1.1.1 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 0.57 47.0 3.66e-01 92.8% 99.5%
5051630 2007.1.14.7 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D 0.57 39.0 2.92e-01 71.1% 89.1%
3792508 632.7.1.35 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › TB2_DP1_HVA22 0.57 40.0 3.91e-01 73.5% 76.7%
5060144 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.57 39.0 4.19e-01 72.3% 84.3%
4983596 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.56 39.0 4.27e-01 73.5% 92.3%
3972284 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.56 46.0 4.15e-01 91.6% 91.3%
4513974 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.55 47.0 4.18e-01 95.2% 93.3%
4552377 610.3.1.1 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.55 45.0 3.67e-01 94.0% 71.4%
5060020 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.54 37.0 4.09e-01 72.3% 90.8%
3923696 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.54 35.0 3.51e-01 94.0% 62.2%
3482900 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.54 34.0 3.45e-01 90.4% 65.0%
4955276 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.53 38.0 3.40e-01 74.7% 60.8%
3608406 1189.1.1.3 alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › GARP 0.53 37.0 2.82e-01 74.7% 72.2%
5047712 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.52 36.0 3.80e-01 73.5% 96.0%
5068187 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.52 36.0 3.79e-01 72.3% 79.7%
3892432 110.1.1.2 alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD 0.51 36.0 3.47e-01 73.5% 83.2%
4241645 632.22.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.51 35.0 3.50e-01 73.5% 83.3%
4018322 611.7.1.0 alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain 0.51 41.0 3.44e-01 88.0% 85.5%
4012484 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.51 44.0 3.66e-01 100.0% 71.0%
5021068 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 3.45e-01 72.3% 96.7%
3264196 5067.1.1.13 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › ALMT 0.50 36.0 2.90e-01 74.7% 89.1%
4492498 632.7.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.50 35.0 3.54e-01 71.1% 75.0%
D2 high residues 99-200
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03837.20 best RecT 57.1 2.50e-15 99.0% 48.2%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bqnA05 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.72 40.0 3.68e-01 100.0% 42.0%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 35.0 2.65e-01 89.2% 22.6%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 32.0 3.20e-01 99.0% 45.9%
2yn3B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 34.0 3.99e-01 83.3% 74.6%
2azeB00 6.10.250.540 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 26.0 2.65e-01 90.2% 38.6%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 32.0 3.14e-01 100.0% 47.3%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 29.0 3.11e-01 96.1% 53.5%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.58 28.0 3.60e-01 78.4% 80.4%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 27.0 3.22e-01 98.0% 74.6%
4ufcA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.51 41.0 2.92e-01 89.2% 51.8%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4423403 330.1.1.14 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › RecT 0.91 86.0 7.44e-01 100.0% 69.0%
3633556 2485.2.1.0 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain 0.61 55.0 4.78e-01 100.0% 89.0%
5061482 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 34.0 3.65e-01 80.4% 64.4%
5029907 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 33.0 3.58e-01 80.4% 67.1%
5081970 11.1.1.15 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD 0.56 32.0 3.73e-01 83.3% 81.4%
4969916 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 34.0 3.60e-01 83.3% 71.1%
5045572 11.1.1.246 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_7 0.53 33.0 3.50e-01 80.4% 68.4%
5045643 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 34.0 3.51e-01 80.4% 69.5%
5070725 11.1.1.246 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_7 0.52 33.0 3.41e-01 81.4% 67.4%
4980738 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 33.0 3.48e-01 81.4% 69.5%
3967353 11.1.1.1363 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27732 0.52 37.0 3.37e-01 84.3% 55.6%
3658595 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.52 33.0 3.89e-01 93.1% 92.9%
4946829 11.1.1.18 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LTD 0.52 32.0 3.35e-01 81.4% 67.4%
4981223 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 33.0 3.48e-01 81.4% 71.6%
5069617 11.1.1.246 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_7 0.51 32.0 3.45e-01 80.4% 73.3%