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HQ332139.1__AGF91543.1__PRRG_00032__00032

Bact-Vir

HQ332139.1__AGF91543.1__PRRG_00032__00032

Identity

Accession:
HQ332139 ↗
Kingdom:
phage

Quality

62.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 176-248
PDB
D2 medium residues 93-156_417-454
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21703.4 best Gp10A-like 64.6 1.70e-17 62.7% 20.9%
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ohgA01 3.30.2400.10 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › Major capsid protein gp5 0.79 73.0 6.43e-01 100.0% 71.2%
4frwA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 36.0 3.70e-01 98.0% 51.0%
6i9gA01 3.30.2400.30 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › 0.68 61.0 5.09e-01 97.1% 69.8%
4z9eA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.66 41.0 4.39e-01 95.1% 72.9%
3fz2A00 3.30.70.1700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U 0.66 48.0 4.47e-01 94.1% 60.9%
3tupA02 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.65 40.0 4.14e-01 97.1% 64.6%
3tf8B00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.65 37.0 3.09e-01 95.1% 31.0%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.64 40.0 3.97e-01 96.1% 59.4%
3so5A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 36.0 3.66e-01 98.0% 54.3%
4gafB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 39.0 3.82e-01 96.1% 57.3%
4fprB00 3.30.70.2910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 47.0 4.35e-01 96.1% 62.5%
2yqzA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 39.0 3.16e-01 96.1% 32.6%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.62 46.0 4.60e-01 95.1% 76.5%
3m86A00 2.60.40.2020 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 36.0 3.56e-01 95.1% 52.3%
5a2fA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 39.0 3.78e-01 94.1% 57.1%
1gupB01 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.62 45.0 3.84e-01 91.2% 46.5%
4ewtA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 45.0 4.36e-01 95.1% 68.7%
1vmbA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.60 40.0 3.98e-01 96.1% 64.5%
1p1lA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 34.0 3.50e-01 96.1% 56.9%
4eo0A00 3.30.110.160 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.59 50.0 5.03e-01 96.1% 96.2%
1fx3B00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.59 46.0 4.06e-01 83.3% 81.2%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.59 44.0 4.36e-01 97.1% 76.2%
3iabB01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.58 36.0 3.65e-01 94.1% 61.6%
1hnnA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 41.0 3.05e-01 94.1% 28.7%
2vxaA00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.57 37.0 4.32e-01 96.1% 100.0%
3u83A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 34.0 3.46e-01 98.0% 58.4%
1nbwA02 3.90.470.30 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Coenzyme B12-Dependent Enzyme linker domain 0.57 48.0 4.33e-01 93.1% 100.0%
2c5dC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 36.0 3.63e-01 99.0% 62.5%
3qv2A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 35.0 2.82e-01 90.2% 30.5%
2x1wL02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 33.0 3.27e-01 98.0% 53.3%
2as0A03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 38.0 2.99e-01 96.1% 31.7%
2okqB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 42.0 4.06e-01 100.0% 68.6%
1ok8A03 3.30.387.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 3 › Viral Envelope Glycoprotein, domain 3 0.56 34.0 3.72e-01 94.1% 74.1%
2i6gB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 39.0 3.14e-01 94.1% 36.7%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 34.0 3.47e-01 89.2% 60.6%
2yxdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 34.0 2.82e-01 95.1% 34.1%
2bzgA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 37.0 2.87e-01 94.1% 30.6%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 33.0 2.79e-01 95.1% 33.0%
3fk4B01 3.30.70.150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain 0.55 39.0 3.81e-01 93.1% 67.0%
4ipaB01 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.54 46.0 3.24e-01 92.2% 32.7%
2ebeA00 3.30.70.2290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF3208) 0.53 35.0 3.49e-01 93.1% 64.2%
1pjzA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 36.0 2.94e-01 93.1% 35.8%
1txkB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 33.0 3.23e-01 92.2% 54.8%
3bfmA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 44.0 3.68e-01 93.1% 58.7%
2bj0A00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.52 40.0 3.18e-01 95.1% 41.4%
4rx6D00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 33.0 3.29e-01 93.1% 60.7%
7ec0P01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 43.0 3.47e-01 94.1% 89.8%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3090875 2485.3.1.14 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp10A-like 0.91 87.0 5.94e-01 100.0% 83.3%
3110786 2485.3.1.14 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp10A-like 0.88 84.0 5.59e-01 100.0% 77.0%
3088027 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.86 81.0 5.78e-01 100.0% 72.0%
2989289 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.85 79.0 5.42e-01 100.0% 69.7%
2989506 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.83 77.0 5.42e-01 100.0% 81.4%
2842229 2485.3.1.9 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.83 77.0 5.12e-01 100.0% 72.6%
2841509 2485.3.1.12 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF6260 0.82 77.0 5.36e-01 100.0% 78.2%
2989356 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.81 76.0 5.32e-01 100.0% 74.1%
3949155 2485.3.1.11 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like 0.81 75.0 5.41e-01 99.0% 79.6%
2989363 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.78 72.0 5.01e-01 100.0% 74.7%
4954550 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.76 57.0 5.46e-01 94.1% 68.7%
3971017 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.69 48.0 4.68e-01 99.0% 65.5%
3280414 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.69 50.0 5.02e-01 95.1% 74.3%
3276097 304.20.1.1 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP_RNA-bind 0.69 50.0 4.49e-01 92.2% 55.0%
4933378 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.68 50.0 4.97e-01 96.1% 74.3%
5037695 304.8.1.82 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 0.67 50.0 4.68e-01 98.0% 64.0%
3889764 11.1.1.108 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.66 36.0 3.58e-01 99.0% 49.5%
3442608 304.20.1.1 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP_RNA-bind 0.66 49.0 4.41e-01 93.1% 56.4%
4937751 304.8.1.82 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 0.66 43.0 4.09e-01 97.1% 56.7%
4030190 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.66 45.0 4.18e-01 96.1% 54.9%
5035531 304.48.1.32 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD 0.65 43.0 3.71e-01 94.1% 42.5%
3703942 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.65 40.0 4.01e-01 96.1% 60.0%
3417210 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.64 40.0 4.24e-01 97.1% 71.1%
3957946 256.1.1.12 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › SOUL 0.64 40.0 4.28e-01 89.2% 72.2%
3617902 305.1.1.0 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.64 44.0 4.46e-01 94.1% 72.0%
3965354 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.63 51.0 5.38e-01 93.1% 100.0%
3593784 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.63 38.0 4.11e-01 94.1% 71.8%
3289660 305.1.1.3 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › DUF3000 0.61 47.0 4.51e-01 97.1% 70.8%
5043572 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 31.0 3.25e-01 97.1% 51.1%
3959045 305.1.1.0 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.61 47.0 4.49e-01 97.1% 70.8%
4978850 304.134.1.0 a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like 0.60 37.0 3.88e-01 96.1% 67.8%
5050905 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.60 49.0 4.03e-01 94.1% 48.4%
3693820 328.1.1.3 a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 0.58 46.0 4.03e-01 85.3% 85.7%
3621732 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.58 44.0 4.38e-01 94.1% 79.0%
4927442 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.58 45.0 4.74e-01 95.1% 97.7%
3740450 328.1.1.3 a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 0.57 35.0 3.75e-01 94.1% 70.0%
3971831 11.1.1.130 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Inhibitor_I42 0.57 35.0 3.50e-01 95.1% 56.9%
3198674 246.1.1.0 a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase 0.56 44.0 3.47e-01 90.2% 40.0%
4029363 304.20.1.2 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D3 0.56 39.0 3.40e-01 94.1% 46.3%
4078276 306.7.1.1 a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.56 48.0 4.48e-01 96.1% 83.1%
3849186 306.10.1.2 a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 › H1_KCTD8_12_16 0.55 45.0 4.37e-01 88.2% 100.0%
1903993 2003.1.5.179 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.55 34.0 2.82e-01 95.1% 33.9%
4501320 304.45.1.1 a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK 0.55 37.0 3.13e-01 91.2% 40.6%
3814973 4081.1.1.10 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Gpi16 0.54 47.0 3.89e-01 97.1% 61.6%
3694783 327.16.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.53 40.0 3.48e-01 93.1% 50.0%
3238531 273.1.1.1 a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.52 44.0 3.48e-01 93.1% 51.0%
5043659 886.1.1.2 a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like 0.51 41.0 3.55e-01 84.3% 97.3%
3473287 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.51 44.0 3.64e-01 97.1% 54.2%
3725158 11.1.1.967 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26732 0.51 41.0 3.67e-01 90.2% 62.9%
D3 medium residues 256-317_330-359_400-416_455-470
PDB