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AGN33826.1

Arc-Vir

HQ332141__AGN33826.1__HALG-00038__00038

Identity

Accession:
HQ332141 ↗
Protein ID:
AGN33826.1 ↗
Kingdom:
archaea

Quality

79.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kirjokansivirales› Graaviviridae› Seejivirus› Halorubrum_virus_CGphi46

TaxID: 754066

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-44
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.68 53.0 4.05e-01 100.0% 35.9%
2bh8A02 6.20.370.20 Special › Other non-globular › Rhinovirus 14, subunit 4 › 0.68 43.0 4.57e-01 85.0% 71.9%
1s5jA03 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.68 50.0 3.42e-01 82.5% 44.6%
3m70A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 45.0 3.37e-01 100.0% 29.2%
2gupA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 49.0 3.89e-01 100.0% 39.2%
1qwkA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.62 48.0 2.87e-01 87.5% 26.3%
1cm5A00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.62 53.0 2.92e-01 100.0% 39.7%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 49.0 3.58e-01 100.0% 33.8%
4hqsA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 44.0 3.18e-01 100.0% 23.7%
1wu2A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.61 40.0 3.41e-01 85.0% 35.1%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 49.0 4.11e-01 97.5% 51.4%
1to3A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 49.0 3.00e-01 100.0% 91.8%
2bmxB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 42.0 2.86e-01 100.0% 19.2%
1z6nA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 44.0 3.15e-01 100.0% 30.7%
1yf2A02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.59 47.0 3.49e-01 92.5% 50.5%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 46.0 3.33e-01 97.5% 92.9%
1xvwA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 41.0 2.87e-01 100.0% 20.9%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 45.0 2.66e-01 87.5% 18.3%
2rvjA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 48.0 3.70e-01 100.0% 91.8%
4eo3A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 38.0 2.71e-01 75.0% 20.3%
6denA03 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.56 45.0 2.89e-01 92.5% 34.2%
2uwiA02 2.10.50.10 Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 0.56 40.0 3.99e-01 92.5% 79.5%
5nckA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 42.0 3.35e-01 97.5% 81.9%
6aikB00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.55 38.0 2.39e-01 85.0% 30.2%
3aluA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.54 39.0 2.67e-01 77.5% 23.6%
2dnhA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 41.0 3.28e-01 100.0% 69.5%
1x5oA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 41.0 3.45e-01 100.0% 88.4%
1k8kA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.53 37.0 2.90e-01 100.0% 32.6%
3smzA03 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 43.0 3.42e-01 100.0% 66.0%
2cqpA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 43.0 3.41e-01 100.0% 65.3%
4qu7A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 40.0 3.42e-01 100.0% 80.2%
3sdeA02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 42.0 3.41e-01 100.0% 70.8%
2dnnA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 39.0 3.36e-01 100.0% 80.5%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3957585 2484.1.1.144 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 0.76 58.0 4.48e-01 100.0% 36.8%
4169299 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.73 52.0 3.79e-01 75.0% 27.5%
3899253 3957.1.1.0 ↗ a+b two layers › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 0.71 60.0 5.84e-01 100.0% 93.3%
2138587 2498.1.1.23 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M49 0.71 52.0 2.86e-01 80.0% 23.9%
3918540 386.1.1.281 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF27082 0.70 51.0 5.11e-01 100.0% 77.5%
5063297 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.69 48.0 4.06e-01 100.0% 42.9%
3702049 2485.1.1.12 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SCO1-SenC 0.68 50.0 3.51e-01 100.0% 22.7%
3511091 220.1.1.145 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RASGAP 0.67 51.0 4.69e-01 95.0% 61.7%
3360324 2485.1.1.12 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SCO1-SenC 0.66 49.0 3.56e-01 100.0% 26.2%
3250206 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.66 48.0 4.14e-01 100.0% 46.7%
3269373 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 51.0 3.99e-01 97.5% 38.9%
3974688 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.65 50.0 4.69e-01 100.0% 68.0%
5023832 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.65 53.0 4.48e-01 100.0% 97.3%
3652038 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.64 52.0 4.28e-01 100.0% 57.6%
3832580 320.4.1.3 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB 0.64 45.0 3.16e-01 75.0% 28.0%
3422969 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.64 52.0 3.89e-01 100.0% 75.6%
4952072 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.64 46.0 4.42e-01 100.0% 66.0%
3957202 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.64 45.0 3.44e-01 92.5% 31.0%
3909292 220.1.1.37 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_13 0.63 50.0 3.34e-01 97.5% 20.5%
3833391 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.63 51.0 4.27e-01 100.0% 62.8%
5055290 244.4.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › PF27537 0.62 44.0 3.93e-01 85.0% 73.5%
4996799 2485.1.1.4 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA 0.62 45.0 3.61e-01 100.0% 38.8%
3645494 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 47.0 3.05e-01 100.0% 20.0%
4208873 3016.1.1.17 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GcvP2_C 0.61 50.0 3.55e-01 97.5% 48.9%
3799812 2485.1.1.71 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SelP_N 0.61 46.0 3.49e-01 100.0% 33.3%
3442291 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.61 45.0 2.58e-01 100.0% 7.2%
3184113 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.60 51.0 3.94e-01 100.0% 61.0%
4945661 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.60 42.0 2.67e-01 77.5% 41.7%
5051298 2485.1.1.4 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA 0.58 41.0 3.18e-01 97.5% 28.7%
4996926 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.58 42.0 3.56e-01 100.0% 43.8%
86702 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.57 42.0 3.98e-01 100.0% 65.4%
4980097 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 46.0 3.38e-01 100.0% 95.2%
3958223 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 48.0 3.73e-01 100.0% 96.8%
3694501 2003.1.3.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FAD_binding_3 0.57 45.0 2.87e-01 95.0% 50.5%
4029105 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 42.0 3.81e-01 100.0% 55.4%
3941091 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.56 40.0 2.88e-01 87.5% 22.9%
3909868 221.1.1.89 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Il2rg 0.56 49.0 3.51e-01 100.0% 34.2%
3954149 221.15.1.0 ↗ a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.56 47.0 4.20e-01 100.0% 68.3%
3688824 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.55 43.0 3.49e-01 100.0% 93.7%
4641033 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 46.0 3.53e-01 95.0% 97.8%
4153905 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.53 36.0 2.96e-01 100.0% 31.9%
4928783 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.53 41.0 3.77e-01 100.0% 95.2%